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Database: UniProt
Entry: A0A0D3F0T9_9ORYZ
LinkDB: A0A0D3F0T9_9ORYZ
Original site: A0A0D3F0T9_9ORYZ 
ID   A0A0D3F0T9_9ORYZ        Unreviewed;      1950 AA.
AC   A0A0D3F0T9;
DT   29-APR-2015, integrated into UniProtKB/TrEMBL.
DT   29-APR-2015, sequence version 1.
DT   24-JAN-2024, entry version 39.
DE   RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE            EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
OS   Oryza barthii.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX   NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART02G04100.1};
RN   [1] {ECO:0000313|EnsemblPlants:OBART02G04100.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART02G04100.1};
RX   DOI=10.1007/s12284-009-9025-z;
RA   Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L.,
RA   Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B.,
RA   Knight J., Niazi F., Egholm M., Wing R.A.;
RT   "De novo next generation sequencing of plant genomes.";
RL   Rice 2:35-43(2009).
RN   [2] {ECO:0000313|EnsemblPlants:OBART02G04100.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (MAR-2015) to UniProtKB.
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC       DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC       {ECO:0000256|RuleBase:RU004279}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC         ECO:0000256|RuleBase:RU004279};
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC       {ECO:0000256|RuleBase:RU004279}.
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DR   STRING; 65489.A0A0D3F0T9; -.
DR   PaxDb; 65489-OBART02G04100-1; -.
DR   EnsemblPlants; OBART02G04100.1; OBART02G04100.1; OBART02G04100.
DR   Gramene; OBART02G04100.1; OBART02G04100.1; OBART02G04100.
DR   eggNOG; KOG0260; Eukaryota.
DR   eggNOG; KOG2992; Eukaryota.
DR   Proteomes; UP000026960; Chromosome 2.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0009536; C:plastid; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR   CDD; cd02737; RNAP_IV_NRPD1_C; 1.
DR   CDD; cd10506; RNAP_IV_RPD1_N; 1.
DR   Gene3D; 2.40.40.20; -; 1.
DR   Gene3D; 3.10.450.40; -; 1.
DR   Gene3D; 6.10.250.2940; -; 1.
DR   Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR   Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR   Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR   InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR   InterPro; IPR040402; NRPD1_C.
DR   InterPro; IPR040403; NRPD1_N.
DR   InterPro; IPR000722; RNA_pol_asu.
DR   InterPro; IPR006592; RNA_pol_N.
DR   InterPro; IPR007080; RNA_pol_Rpb1_1.
DR   InterPro; IPR007066; RNA_pol_Rpb1_3.
DR   InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR   PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR   PANTHER; PTHR19376:SF51; DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1; 1.
DR   Pfam; PF11523; DUF3223; 1.
DR   Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR   Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR   Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR   SMART; SM00663; RPOLA_N; 1.
DR   SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000256|RuleBase:RU004279};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW   ECO:0000256|RuleBase:RU004279}; Plastid {ECO:0000256|ARBA:ARBA00022640};
KW   Reference proteome {ECO:0000313|Proteomes:UP000026960};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|RuleBase:RU004279};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT   DOMAIN          230..529
FT                   /note="RNA polymerase N-terminal"
FT                   /evidence="ECO:0000259|SMART:SM00663"
FT   REGION          1373..1761
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1874..1950
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1373..1404
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1449..1464
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1482..1513
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1523..1542
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1550..1584
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1611..1635
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1664..1705
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1735..1761
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1893..1932
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1950 AA;  214586 MW;  BF9037478CB9C992 CRC64;
     MSVTWRRTAA GARGGGEGIL MEEDQSAIPV AEGAIKSIKL SLSTEDEIRT YSINDCPVTH
     PSQLGNPFLG LPLETGKCES CGASENGKCE GHFGYIELPV PIYHPCHVTE LRQILNVVCL
     KCLRVKKGKV KQTEGKDNTS ALSCYYCRDL PALSLKEIKT ADGAFRLELK MPPRKFMTEG
     SWNFLDKYGF HHGGTSHCRT LLPEEALNIL KKIPEETKRK LAARGYIAQS GYVMKYLPVP
     PNCLYIPEFT DGQSIMSYDI SISLLKKVLQ KIEQIKKSRA GSPNFESHEV ESCDLQLSIA
     QYIHLRGTTR GPQDNTKRFA ISTDPSALST KQWLEKMRTL FISKGSGFSS RSVLTGDPYI
     GVDVIGLPSE VAKRITFEEQ VTDINLNRLQ EIVDKGLCLT YRDGQATYAI TVGSKGHTTL
     KVGQTISRRI VDGDVVFLNR PPSTHKHSLQ AFRVYVHEDH TVKINPLICA PFAADFDGDC
     VHIYYPQSLA AKAEALELFS VEKQLTSSHS GKVNLQLVSD SLLALKHMSS RTMLSKEAAN
     QLAMLVTCSL PDPAVIKSKP YWTISQIVQG ALPKALTSQG DKHVVRDSTI IKLDLDKESV
     QTSFSDLVYS TLSVKGPGEA LQFLNVLQPL LMELILLDGF SVSLQDFNVP KVLLEEAQKN
     IEKQSLILEQ SRFAENQVVE MRVDNNLKDI KQQISDFVVK RSHLGLLIDP KSDSSVSKVV
     QQLGFVGLQL YREGKFYSRR LVEDCYYTFV NKHPAVREEH SPEAYGLVRS SYFHGLNPYE
     ELVHAISTRE AIVRSSRGLT EPGTLFKNLM ALLRDVVICY DGTVRNVCSK SIIQLNYMED
     DALDFPSAIG PGEPVGVLAA TAISNPAYKA VLDASQSNNT SWERMKEILQ TTSRYKNDMK
     DRKVILFLND CSCAKKFCKE KAAIAVQGCL RRITLEDCAT DICIEDGNWA APAGFQHPVP
     PPQCKILPVP IPIPAHGSVK FPPVPIPAPE HLKYNIHVVR YQKQIGLDGT SEAAPALVGH
     IHLDRAHLER INISTEDILQ KCQEVSGKYG KKKGHLSNLD CSFTQKLVDG KLPKLPCLQF
     FVSDNMIVSE SVERAVSVLA DSLCGVLLNT IIKGDPRIQE AKIVWVGSDA TSWVKNTQKA
     SKGEPAVEII VEEEEALHIG DAWRTTMDAC IPVLNLIDIR RSIPYGIQQV RELLGISCAF
     DQVVQRLSTT VRMVAKDVLK DHLVLVANSM TFTGNLNGFN NAGYKATFRS LKVQVPFTES
     TLITPMKCFE KAAEKCHSDS LGCVVSSCSW GKHAASGTGS SFQILWNESQ LKSNKEYGDG
     LYDYLALVRT DEEKARYTFF DDVDYLAEEN EADVCLSPEL DGTIGQPIFD DNLEEQDVQN
     NSSWDNGTTT NASWEQNGSA GNDSDKWGGW NDAAAGADTG VTKPADQGNS CWDVPATVEK
     SSSDWGGWGT EKAKEKEKIS EEPAQHDAWS VQGPKRATDG GASWKKQSST QNDGNSWKEN
     KGRGSNGGSW EKDNAQKGSW GRGNDEAENN NDVQNKSWET VAADAHASTE KSWGNVTASP
     SDNAWSAAPV SQGNGISQGN ERSDAKQSDS WDGWKSAGVD KAINKDKESL GNVPASPSFS
     AWNAXPVSQG NERXDAKQSD SWDGWKSAGV DKAINKDKES LGNSAGVDAS TNKDKESWGN
     VPASPSDSAW NAAPVSQGDD VWNSAEANES RNKDWKSDGW GARGGNWRGQ RNNPGRPPRK
     PDGRGLPRRP DERGPPRRHF DLTAEEEKIL GEIEPTVLSI RKIFRESIDS IKLSPEDEKF
     IKENVLEHHP EKQSKVSGEI DHIMVDKHQV FQDSRCLFVV SSDGTRSDFS YLKCMENFVR
     KTYPEHGDSF CKKYFKRRRD QPPAADGGTA PGTPAGATQS TAVDTQEGTS QQTQPDIATA
     PAATQQETLQ DTPAPPADDG LLGKGPSPSD
//
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