ID A0A0D3G474_9ORYZ Unreviewed; 1212 AA.
AC A0A0D3G474;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 34.
DE RecName: Full=JmjC domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Oryza barthii.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART05G06220.1};
RN [1] {ECO:0000313|EnsemblPlants:OBART05G06220.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART05G06220.1};
RX DOI=10.1007/s12284-009-9025-z;
RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L.,
RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B.,
RA Knight J., Niazi F., Egholm M., Wing R.A.;
RT "De novo next generation sequencing of plant genomes.";
RL Rice 2:35-43(2009).
RN [2] {ECO:0000313|EnsemblPlants:OBART05G06220.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR AlphaFoldDB; A0A0D3G474; -.
DR STRING; 65489.A0A0D3G474; -.
DR PaxDb; 65489-OBART05G06220-1; -.
DR EnsemblPlants; OBART05G06220.1; OBART05G06220.1; OBART05G06220.
DR EnsemblPlants; OBART05G06220.2; OBART05G06220.2; OBART05G06220.
DR Gramene; OBART05G06220.1; OBART05G06220.1; OBART05G06220.
DR Gramene; OBART05G06220.2; OBART05G06220.2; OBART05G06220.
DR eggNOG; KOG1246; Eukaryota.
DR HOGENOM; CLU_000991_8_0_1; -.
DR Proteomes; UP000026960; Chromosome 5.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0008198; F:ferrous iron binding; IEA:EnsemblPlants.
DR GO; GO:0032453; F:histone H3K4 demethylase activity; IEA:EnsemblPlants.
DR GO; GO:0045814; P:negative regulation of gene expression, epigenetic; IEA:EnsemblPlants.
DR GO; GO:0040010; P:positive regulation of growth rate; IEA:EnsemblPlants.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003889; FYrich_C.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR PANTHER; PTHR10694:SF113; PROTEIN JUMONJI; 1.
DR Pfam; PF05965; FYRC; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00542; FYRC; 1.
DR SMART; SM00541; FYRN; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51543; FYRC; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000026960}.
FT DOMAIN 128..169
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 322..488
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT DOMAIN 993..1051
FT /note="FYR N-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51542"
FT DOMAIN 1053..1143
FT /note="FYR C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51543"
FT REGION 56..79
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 189..240
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 675..699
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 751..772
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 808..837
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 876..952
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 219..233
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 676..697
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 876..915
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 933..952
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1212 AA; 134414 MW; A6F085393513B133 CRC64;
MMGVTTTLNE DTEPSIPPGF GPFATLPLWG IHNDAKPAVT HSTPVQALQS IRKDSEECQP
SAAVSRSDTP CSTSGTQTCR KSLRNRPPID YSRFEHISDE DSDVEIVEKD VIAKWNPAGA
RRPALDEAPV FYPTEEEFED TLKYIESIRP MAEPYGICRI VPPSSWKPPC LLKDKSIWEG
SKFSTRVQKV DKLQNRKSSK KGRRGGMMKR RKLAESEENS ATAHTQTGMQ QSPERFGFEP
GPEFTLQTFQ KYADDFSKQY FRKDTSMDSV PSVEDIEGEY WRIVEVPTEE IEVIYGADLE
TGTFGSGFPK LSPETKSDAE DKYAQSGWNL NNLPRLQGSV LSFEGGDISG VLVPWVYVGM
CFSSFCWHVE DHHLYSLNYM HWGAPKMWYG VPGKDAVNLE SAMRKHLPEL FEEQPDLLHN
LVTQFSPSLL KSEGVHVYRC VQHEGEFVLT FPRAYHAGFN CGFNCAEAVN VAPIDWLPIG
HNAVELYREQ ARKITISHDK LLLGAAREAI RAQWDILFLK RNTADNMRWK SICGADSTIF
KALKARIETE LAQRKTLGVP AQSRKMDAEF DSIDRECALC YYDLHLSASG CPCCPEKYAC
LVHAKQLCSC DWDKRFFLFR YDVNELNILA DALGGKLSAI HRWGVSDLGL SLSSCVKREK
VQDSKTVRRL TDGPRRSYMS QASAVSLVSS STSNEQKDEG NKIMKIASPQ TNNVCPSVEQ
RKSENISPLK EPCVRNELSC TTNSDSNGLQ YNGGLGGHKG SAPGLPVSSS PSFSSNVATR
PISTSSVSMK IVQGLVASKS CIQASSRTGD SRSLLGEHHN RSPAMIHDGT NMKSSLESSN
NSCRLIASDY NATPCHSSKD QVLVTPGTNA SVATLKDSSQ VHSASSQQFV RTGPWTQSAS
HEASSPSTSA LNPSLDPPAM KNLYGGFTQG SAHPGPPSFS NQQPNDGRLQ RTSESLPGVE
ARARGHPTVT AQPALEIHSR NGGAQKGPRI ANVVHRFKCS VEPLEIGVVL SGRLWSSSQA
IFPKGFRSRV KYFSIVDPIQ MAYYISEILD AGMQGPLFMV KLENCPGEVF INLSPTKCWN
MVRERLNMEI RRQLNMGKSN LPTLQPPGSV DGLEMFGLLS PPIVQAIWAR DRDHICTEYW
RSRPHVLIED PNNRHMLSQG PPLLALRGLI QRANRDELQV LRSLMTNSNN LDDSSRQQAA
HIIEEEIAKQ LC
//