ID A0A0D3GYK5_9ORYZ Unreviewed; 790 AA.
AC A0A0D3GYK5;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=Homeobox domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Oryza barthii.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART08G09450.1};
RN [1] {ECO:0000313|EnsemblPlants:OBART08G09450.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART08G09450.1};
RX DOI=10.1007/s12284-009-9025-z;
RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L.,
RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B.,
RA Knight J., Niazi F., Egholm M., Wing R.A.;
RT "De novo next generation sequencing of plant genomes.";
RL Rice 2:35-43(2009).
RN [2] {ECO:0000313|EnsemblPlants:OBART08G09450.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class IV subfamily.
CC {ECO:0000256|ARBA:ARBA00006789}.
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DR AlphaFoldDB; A0A0D3GYK5; -.
DR STRING; 65489.A0A0D3GYK5; -.
DR PaxDb; 65489-OBART08G09450-1; -.
DR EnsemblPlants; OBART08G09450.1; OBART08G09450.1; OBART08G09450.
DR Gramene; OBART08G09450.1; OBART08G09450.1; OBART08G09450.
DR eggNOG; ENOG502QUAY; Eukaryota.
DR HOGENOM; CLU_015002_2_1_1; -.
DR Proteomes; UP000026960; Chromosome 8.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR CDD; cd08875; START_ArGLABRA2_like; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR042160; GLABRA2/ANL2/PDF2/ATML1-like.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45654; HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1; 1.
DR PANTHER; PTHR45654:SF115; HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC6; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF55961; Bet v1-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Homeobox {ECO:0000256|ARBA:ARBA00023155, ECO:0000256|PROSITE-
KW ProRule:PRU00108};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Reference proteome {ECO:0000313|Proteomes:UP000026960};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 59..119
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DOMAIN 245..507
FT /note="START"
FT /evidence="ECO:0000259|PROSITE:PS50848"
FT DNA_BIND 61..120
FT /note="Homeobox"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT COILED 118..152
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 790 AA; 87192 MW; 4E703394C8E864E1 CRC64;
MDGELKLMAS YVSKLKFILQ KDQQQEPHTA NLLVLLGSSN QDKRNGLSQG ENRMDTCTRK
KPRRYQLLTM QQKETLNRAF QSCPNPDRND LKKLAKELNM TETQIKYWFQ NCRTKMKKFK
NNEERKLLQK ENEELKKENA ELRHRMKNST CRACDLPLFH IDCRHWENPM LNKGNHGVTS
NLIPQAVSSL LPSSSGFVAS GSNLSSNAVL MPVSAMPSSV LQPAPAVSGA NFPILHNLSA
NANDGYTEKN VLLDLANRAM EEFFSLMKEN ESLLVKKKEN GLLWLPHMDI LGVESLNYQE
YLAKSRTIGQ KPVDFKVVVT RDTAIVNGSC VDLVKSLLDA NRWRELFPGI VASANTTKII
STGPSNLHDG LLQLKNLQMR AELQVMSPEV PVCDVTFLRQ SVQFGSGLWC VVDVSIDTIL
PGESKTAQSS VQTSSTAARR MEVRLLPSGC VIEEMENGYS KVTWMVHAAY DERAVPVLYH
SLLRSAKALG ACRWVASLQR HSQFLSGLHK YIFCPDSTMT EVVMRRKVLY LVKQMTSSFT
GLFASMSKAT LQDGDDTHFA HQIVGGAAGE PAGLLLSATT TIWLPGVNPR RVYDHLRDEQ
CHGEWRCLLG EQLHQGNALP YGAPLNGETV PEFYRMVNGL HEGHTISLIS PREMGGNISN
TLLLQEARTD LSGSLIVYAR TDVNTVHSIM NSGLNPATVF LVSSGCAILP DCLESFPLHP
AATADQAGTS SAAIASRSET GGSFVTVTYQ MFFSSQGGAA PASSSIHQGR DALKKATDIF
KVVLDTLTVA
//
