ID A0A0D3H6A4_9ORYZ Unreviewed; 2064 AA.
AC A0A0D3H6A4;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 36.
DE RecName: Full=BED-type domain-containing protein {ECO:0000259|PROSITE:PS50808};
OS Oryza barthii.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART09G08510.1};
RN [1] {ECO:0000313|EnsemblPlants:OBART09G08510.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART09G08510.1};
RX DOI=10.1007/s12284-009-9025-z;
RA Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L.,
RA Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B.,
RA Knight J., Niazi F., Egholm M., Wing R.A.;
RT "De novo next generation sequencing of plant genomes.";
RL Rice 2:35-43(2009).
RN [2] {ECO:0000313|EnsemblPlants:OBART09G08510.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SUBUNIT: Homodimer. {ECO:0000256|ARBA:ARBA00011738}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR STRING; 65489.A0A0D3H6A4; -.
DR PaxDb; 65489-OBART09G08510-1; -.
DR EnsemblPlants; OBART09G08510.1; OBART09G08510.1; OBART09G08510.
DR Gramene; OBART09G08510.1; OBART09G08510.1; OBART09G08510.
DR eggNOG; KOG1121; Eukaryota.
DR HOGENOM; CLU_232927_0_0_1; -.
DR Proteomes; UP000026960; Chromosome 9.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; IEA:UniProt.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR34396; OS03G0264950 PROTEIN-RELATED; 1.
DR PANTHER; PTHR34396:SF24; OS09G0382120 PROTEIN; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 3.
DR Pfam; PF14372; hAT-like_RNase-H; 3.
DR SMART; SM00614; ZnF_BED; 3.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 2.
DR SUPFAM; SSF53098; Ribonuclease H-like; 3.
DR PROSITE; PS50808; ZF_BED; 3.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000026960};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00027}.
FT DOMAIN 56..108
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
FT DOMAIN 728..784
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
FT DOMAIN 1359..1417
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
FT REGION 1..51
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 701..724
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 822..909
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1428..1525
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 23..37
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 845..859
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 889..909
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1428..1442
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1467..1482
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1490..1507
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 2064 AA; 237524 MW; CE4BA3CC863156DA CRC64;
MDDQECGGPS GGVGKQEDGE MNGMENEVDD ADDMVEQEES SGSTPSPLLL GTWPKRLRSK
VWDDFTPIFV DGKVARAECM HCHRVFNSGT SNLLKHQAKC SPRAQKRPMQ QELPVSLSVE
NRSPKELDAV EQDIPTDKNT KNLEVEQAET NKLVRTLAMY GDIPLRVSNH GEFSRFVASL
NPMVEIPPAD SLYLYFTGLF EEEKAKLKKR LASLNSRVSL SVYVWHYDTL LPFLCLSVHY
IDDQWQKDKK IIAFQAVDSS CHAKELSMVI LTAIRVGVSL ASIALDDAFI DDSVASDVKD
ILQKWNSLHA DESLSGNQSL FVVRYATHLL DQIIQLFDKI WDVKKDLHRE PVYYSDEESS
YVREKMQRKF KEQWKFNCLH ICMPMIMDPK YRLEIIKSRI MYNFNSDMED YIEEVNDMLL
RLFREYSGQT EDPNCTPSFI TSGWNYLYKD DRLLDHYHYS EFPERKRPMT EFDQYLEDPC
LSNDGTSVLK WWKEHSMIYP TIARIARDIL AIPYRTDCKV ATRTTRVAIA KSDGNHYVEE
CVCTQDWLRS GGLQDSTMRV LRFRNVEDNM LSSFGNYVQP NRSLTTQILV QHDAVRKEQR
LNYSKSTQVQ NWSSSASLLG RTKMVKWALG FQAWAPWKSG AQTKREEKSS LPKRVAAAAE
VAARNPALRP GIGMEQDCDD AANQVGAGEE RILNGMGDNV DNANDMAEQE ESSGSAPSPL
FLGTRPKRLR SKAWDDFTPI YMDGKVAKAE CMHCHQVFVS NSTSGTSSLL KHQSKCNPHS
QKRAMQQKLP FLPSSQKNLT TLNSDPRQKK LLFLPISQKK CSDTADVMPH KKDPALPNSM
NDTNRKSQEV DKSGSREELA TPEQKNLTLR HVPTNNNDQS HDEHPVPEQK NNPTGTNMKN
PETDQNGSNG LIQTMAMCGY LPLMMHNDRF RKCLPCFDSM VNMPANINIY LDFIQLFDKE
KAKLKERFAA LSSRVCLSAH VWHYVQQLAF LCLSVHYIDE EWERQQKIIR FCHVGPSCDA
GELSSVILGA IEKWGLRDKV FSIVLDDEFV DDSVASNVKA HLQKWNFHPS GKDWTCARRI
CDTLEDFHRC IDIMPNFPCP VDLFDMVWKV KRDLQREVDN NRDDSFSTVV KKMQEKFKNC
WKLCCLHFYL AMVVDPSHRL EHIKFRVRLH TDTDYIHYMH DIFLNLFDEY SGKVEDTNCT
SETRTEVGVD GGDARLKYYR QYENPICERP MTELDQYLQE PRLSGGERDV LRWWKGHNLT
YPTVARMARD ILAIPCRTYF NIATRTAKFA IRESRRNFYI EELVCFQDWL TSDGMDQDCD
DVAKQEWEIM LIMPITWMNK RKSSGSAPSP LFLGTRPKRL RSKVWDDFKP IYIDGKVARA
ECMHCHQILI SNSANGSSNL LKHQAKCSPH PQKRPMQQKL PFLLSSQKSL TAPNSDPTQK
KLPFLPISQK KCSGPADAMP QKKDPALPNS MNDTNWKSQE VGKSGSPEEL ATPEQKNLSL
PDVPTNNNRK DQPHDENLVP KQKCNPTVVN LKNPEVDQSG SNGLIQTMAM CGYLPMMMYN
NRFRKCVPCL NSMLPMPSND SRFGDFMQLF HNEKAKLKEK FSTLSSRVCL SAHVWHHDPL
SAYLCLSVHY IDNEWERQQK IIRFRQVDPS CNARELSDAI LRAIEDWGLR DKVFCITLDD
EFADDSVASN VKDHLQKWNS HYSNQSLFVV RYGTYLLDQV IQVGLDELDK SMEKSMKCSK
FTEGFTSSAV RKANHNYAES AKDWSSARPI CDTLESFHQY MDKMHDFPRP RHLFDKVWAV
KCDLQRKVDI YKDGAFSTVL KKMQQKFEKC WKLCCFHFYM AMAVDPSYRL EHINFHVSLY
RDIDYIRYMH DIFLNLFDEY SGKVEDTNST SETRNEVGVN RDDDRLKYYH QHQSEISICE
RPMTELDQYL LEPRLSKGEP DVLRWWKGHN LTYPTVARMA RDILAMPCRT NCNVAIRTAK
FAKCESRSSH DIEELVCLQD WLTPDGFKYE KNAQTTTCSD NFGHYAKLIV VFVTDGGVKR
LLLNPWTATG APGLAVHTGQ IAEL
//
