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Database: UniProt
Entry: A0A0D6XTT5_9STAP
LinkDB: A0A0D6XTT5_9STAP
Original site: A0A0D6XTT5_9STAP 
ID   A0A0D6XTT5_9STAP        Unreviewed;       519 AA.
AC   A0A0D6XTT5;
DT   27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT   27-MAY-2015, sequence version 1.
DT   24-JAN-2024, entry version 40.
DE   RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE            Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE            EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN   Name=cvfA {ECO:0000313|EMBL:SUM57342.1};
GN   Synonyms=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN   ORFNames=NCTC13832_01016 {ECO:0000313|EMBL:SUM57342.1}, TP70_01455
GN   {ECO:0000313|EMBL:KIX91636.1};
OS   Staphylococcus microti.
OC   Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
OC   Staphylococcus.
OX   NCBI_TaxID=569857 {ECO:0000313|EMBL:KIX91636.1, ECO:0000313|Proteomes:UP000032366};
RN   [1] {ECO:0000313|EMBL:KIX91636.1, ECO:0000313|Proteomes:UP000032366}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 22147 {ECO:0000313|EMBL:KIX91636.1,
RC   ECO:0000313|Proteomes:UP000032366};
RA   Guo J.;
RL   Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:SUM57342.1, ECO:0000313|Proteomes:UP000254100}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NCTC13832 {ECO:0000313|EMBL:SUM57342.1,
RC   ECO:0000313|Proteomes:UP000254100};
RG   Pathogen Informatics;
RA   Doyle S.;
RL   Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC       {ECO:0000256|HAMAP-Rule:MF_00335}.
CC   -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC       Rule:MF_00335}.
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DR   EMBL; JXWY01000007; KIX91636.1; -; Genomic_DNA.
DR   EMBL; UHDT01000001; SUM57342.1; -; Genomic_DNA.
DR   RefSeq; WP_044358819.1; NZ_UHDT01000001.1.
DR   AlphaFoldDB; A0A0D6XTT5; -.
DR   STRING; 569857.TP70_01455; -.
DR   PATRIC; fig|569857.6.peg.2152; -.
DR   OrthoDB; 9803205at2; -.
DR   Proteomes; UP000032366; Unassembled WGS sequence.
DR   Proteomes; UP000254100; Unassembled WGS sequence.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR   CDD; cd00077; HDc; 1.
DR   CDD; cd22431; KH-I_RNaseY; 1.
DR   Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR   Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR   HAMAP; MF_00335; RNase_Y; 1.
DR   InterPro; IPR003607; HD/PDEase_dom.
DR   InterPro; IPR006674; HD_domain.
DR   InterPro; IPR006675; HDIG_dom.
DR   InterPro; IPR004087; KH_dom.
DR   InterPro; IPR004088; KH_dom_type_1.
DR   InterPro; IPR036612; KH_dom_type_1_sf.
DR   InterPro; IPR017705; Ribonuclease_Y.
DR   InterPro; IPR022711; RNase_Y_N.
DR   NCBIfam; TIGR00277; HDIG; 1.
DR   NCBIfam; TIGR03319; RNase_Y; 1.
DR   PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR   PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR   Pfam; PF01966; HD; 1.
DR   Pfam; PF00013; KH_1; 1.
DR   Pfam; PF12072; RNase_Y_N; 1.
DR   SMART; SM00471; HDc; 1.
DR   SMART; SM00322; KH; 1.
DR   SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR   SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR   PROSITE; PS51831; HD; 1.
DR   PROSITE; PS50084; KH_TYPE_1; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW   Rule:MF_00335};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW   Membrane {ECO:0000256|ARBA:ARBA00022989};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW   Rule:MF_00335}; Transmembrane {ECO:0000256|ARBA:ARBA00022692};
KW   Transmembrane helix {ECO:0000256|ARBA:ARBA00022989}.
FT   DOMAIN          335..428
FT                   /note="HD"
FT                   /evidence="ECO:0000259|PROSITE:PS51831"
FT   COILED          36..195
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   519 AA;  58687 MW;  B327431621F5D99D CRC64;
     MNLLTLLLIL LGIILGVVAG YFIAQNFIYQ QQVQAKNTAE DIVEQAKKDA ENLKKEKLLE
     AKEENQRIRE QAESELRERR GELQRQESRL LQKEENLERK SDLLDKKDEI LEQKESKLEE
     RQQQVDAKES SVQSIIMKHE QELERISGLT QEEARNEQLE RVENELSQDI AVLVKEKERE
     AKEKVNQTAK ELLATTVQRF AAEHTSESTV SVVNLPNDEM KGRIIGREGR NIRTLETLTG
     IDLIIDDTPE AVILSGFDPI RREIAKTALI NLVSDGRIHP GRIEDMVDKA RREVDEIIRD
     AGEHATFELN VHNMHPDLVK ILGRMHYRTS YGQNVLKHSI EVAHLSGMLA AELNEDVTIA
     KRAGLLHDIG KAIDHEVEGS HVEIGVELAK KYGESATVIN AIHSHHGDVE PTSIISILVA
     AADALSAARP GARKETLENY IKRLERLEAI SENYDGVEKA FAIQAGREIR VIVSPEDIDD
     LQSHRLARDI KDQIEGELQY PGHIKVTVVR ETRAVEYAK
//
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