ID A0A0E0LKW6_ORYPU Unreviewed; 1184 AA.
AC A0A0E0LKW6;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EnsemblPlants:OPUNC07G13900.2};
OS Oryza punctata (Red rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4537 {ECO:0000313|EnsemblPlants:OPUNC07G13900.2};
RN [1] {ECO:0000313|EnsemblPlants:OPUNC07G13900.2}
RP NUCLEOTIDE SEQUENCE.
RA Wing R.;
RT "Oryza genome evolution.";
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:OPUNC07G13900.2}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC Evidence={ECO:0000256|ARBA:ARBA00000600};
CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:13066;
CC Evidence={ECO:0000256|ARBA:ARBA00000600};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC -!- SIMILARITY: Belongs to the DNA2/NAM7 helicase family.
CC {ECO:0000256|ARBA:ARBA00007913}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01341}.
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DR AlphaFoldDB; A0A0E0LKW6; -.
DR STRING; 4537.A0A0E0LKW6; -.
DR EnsemblPlants; OPUNC07G13900.2; OPUNC07G13900.2; OPUNC07G13900.
DR Gramene; OPUNC07G13900.2; OPUNC07G13900.2; OPUNC07G13900.
DR eggNOG; KOG1802; Eukaryota.
DR OMA; VRSNDNQ; -.
DR Proteomes; UP000026962; Chromosome 7.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:InterPro.
DR CDD; cd21407; 1B_UPF1-like; 1.
DR CDD; cd18039; DEXXQc_UPF1; 1.
DR CDD; cd18808; SF1_C_Upf1; 1.
DR CDD; cd21400; ZBD_UPF1-like; 1.
DR Gene3D; 2.40.30.230; -; 1.
DR Gene3D; 6.10.140.1240; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR045055; DNA2/NAM7-like.
DR InterPro; IPR041679; DNA2/NAM7-like_C.
DR InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR InterPro; IPR006935; Helicase/UvrB_N.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047187; SF1_C_Upf1.
DR InterPro; IPR040812; UPF1_1B_dom.
DR InterPro; IPR018999; UPF1_CH/ZBD.
DR PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR PANTHER; PTHR10887:SF364; REGULATOR OF NONSENSE TRANSCRIPTS 1; 1.
DR Pfam; PF13086; AAA_11; 1.
DR Pfam; PF13087; AAA_12; 1.
DR Pfam; PF04851; ResIII; 1.
DR Pfam; PF18141; UPF1_1B_dom; 1.
DR Pfam; PF09416; UPF1_Zn_bind; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51997; UPF1_CH_RICH; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU01341}; Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000026962};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU01341};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU01341}.
FT DOMAIN 63..222
FT /note="Upf1"
FT /evidence="ECO:0000259|PROSITE:PS51997"
FT DOMAIN 428..560
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT REGION 133..163
FT /note="C4"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01341"
FT REGION 968..1025
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1131..1162
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 986..1001
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1008..1025
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1132..1146
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1184 AA; 130194 MW; 5A7BCA4CB14C9800 CRC64;
MPTKLIVAWL KNERVERRRL NVKHLANARA SSAADGLASG VAALSFEEPP GAGAGEDGYD
YGKGDFVEHA CRYCGIHNPA CVARCNVPSC RKWFCNSRGN TSGSHIVNHL VRAKHKEVCL
HKDSPLGETI LECYNCGCRN VFLLGFISAK AENVVVLLCR EPCLSVNALK DMNWDLSQWC
PLIDDRCFLS WLVKVPSEQE QLRARQISAQ QINKVEELWK TNPDASLEDL EKPGVDDEPQ
QVALKYEDAY QYQNVFAPLI KLEADYDKMM KESQSKDSLT VRWDIGLNKK RIAYFVFPKE
DNELRLVPGD ELRLRYSGDS SHPAWQSVGH VIKLTAQEEV ALELRASQGV PVDLNHGFSV
DFVWKSTSFD RMQGAMKTFA VDETSVSGYI YHHLLGHEVE HQIIRNTLPR RFGAPGLPEL
NASQVLAVKS VLQKPISLIQ GPPGTGKTVT SAAIVYHMAK QGQGQVLVCA PSNVAVDQLA
EKISSTGLKV VRLCAKSREA VSSPVEHLTL HYQVRHLDTS EKSELHKLQQ LKDEQGELSS
SDEKKYKALK RATEREILQS ADVICCTCVG AGDPRLANFR FRQVLIDEST QATEPECLIP
LVLGVKQVVL VGDHCQLGPV IMCKKAARAG LAQSLFERLV ILGVKPFRLQ VQYRMHPCLS
DFPSNCFYEG TLQNGVTVNE RQTPGIDFPW PVPNRPMFFY VQMGQEEISA SGTSYLNRTE
AANVEKIVTT FLRSGVVPSQ IGVITPYEGQ RAYIVNYMSR NGSLRQQLYK EIEVASVDSF
QGREKDYIIL SCVRSNEHQG IGFLNDPRRL NVALTRARYG IVILGNPKVL SKQPLWNSLL
THYKEHECLV EGPLNNLKQS MVQFQKPKKI YNDRRLFLGG GQGVMQGASF GAAGTNPVAD
KRSGRGKGHS FVPFGPPNGA HKPGVHPSGY PLPRMPFPPF AGAHSQPYAI PTRGSLHGPI
GAVPPVPQPG NRNFGPRGNT GGPIGGHLAH QQNSQQAMGG MGSAFNFPGL ENPSSQPSGG
GPMSQTGLMT QMPVQGLSQT FRDGFSIGGM SQDFFGDDFK SQGSHVAYNI ADFSTQASQG
GYGVDYSQGP QSGYPGNYLN QNAHPGYSHM GAANDIVSQD HMAHGSHGMF TQAGYNDPSQ
DESSQMHFGM AGPGLQSQPM MNPLYSQSYA HYNTQPQSLQ PPPQ
//
