ID A0A0E3W315_9FIRM Unreviewed; 369 AA.
AC A0A0E3W315;
DT 24-JUN-2015, integrated into UniProtKB/TrEMBL.
DT 24-JUN-2015, sequence version 1.
DT 27-MAR-2024, entry version 36.
DE SubName: Full=RNA polymerase sigma factor 54 interaction domain {ECO:0000313|EMBL:CFX40015.1};
GN ORFNames=1138 {ECO:0000313|EMBL:CFX40015.1};
OS Syntrophomonas zehnderi OL-4.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Syntrophomonadaceae;
OC Syntrophomonas.
OX NCBI_TaxID=690567 {ECO:0000313|EMBL:CFX40015.1, ECO:0000313|Proteomes:UP000045545};
RN [1] {ECO:0000313|EMBL:CFX40015.1, ECO:0000313|Proteomes:UP000045545}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=OL-4 {ECO:0000313|EMBL:CFX40015.1,
RC ECO:0000313|Proteomes:UP000045545};
RA Murphy D.;
RL Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CGIH01000020; CFX40015.1; -; Genomic_DNA.
DR RefSeq; WP_052729615.1; NZ_CGIH01000020.1.
DR AlphaFoldDB; A0A0E3W315; -.
DR STRING; 690567.1138; -.
DR OrthoDB; 9803970at2; -.
DR Proteomes; UP000045545; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000045545};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 48..279
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 369 AA; 41762 MW; 1048D77AC7B1D442 CRC64;
MKSSPSDKES FAITERAAQS KYLRASNSIR QTPADLLEFA KKAGIDYVGI HSPGMQEVFE
QSSRFHQDRS IPVLIEGETG TGKEIIARYI HYGKNPVERP FIAINCAALA PIVFESELFG
YEAGTFTGGL KDGKPGKLDL AEGGTLFLDE ICELSLELQA KLLRLIQEKE YYRVGGLNII
KSDVRFICSS NQDMEEIVAK GYFRKDLYYR LAVGRILIPP LRERQEEILP MAEAFLSQIS
RSKGKQYRGF SDEAAAFMLQ YSWSGNVRQL RNEIERLVLF HDDPVIKPEH LTIKKNDGKL
LAQPQEGVSY LLKPGEIALP RYPFSLDELN NEIMLKALQM HNDNKTSTAQ YLGISRSALL
YRLKKIGHY
//
