ID A0A0E4GC60_9FIRM Unreviewed; 707 AA.
AC A0A0E4GC60;
DT 24-JUN-2015, integrated into UniProtKB/TrEMBL.
DT 24-JUN-2015, sequence version 1.
DT 24-JAN-2024, entry version 43.
DE SubName: Full=RNA polymerase sigma factor 54 interaction domain {ECO:0000313|EMBL:CFY10387.1};
GN ORFNames=2750 {ECO:0000313|EMBL:CFY10387.1};
OS Syntrophomonas zehnderi OL-4.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Syntrophomonadaceae;
OC Syntrophomonas.
OX NCBI_TaxID=690567 {ECO:0000313|EMBL:CFY10387.1, ECO:0000313|Proteomes:UP000045545};
RN [1] {ECO:0000313|EMBL:CFY10387.1, ECO:0000313|Proteomes:UP000045545}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=OL-4 {ECO:0000313|EMBL:CFY10387.1,
RC ECO:0000313|Proteomes:UP000045545};
RA Murphy D.;
RL Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CGIH01000052; CFY10387.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0E4GC60; -.
DR STRING; 690567.2750; -.
DR Proteomes; UP000045545; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF13426; PAS_9; 3.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 3.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000045545};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 9..60
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 133..178
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 393..623
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 707 AA; 79601 MW; 397730AAA402D33D CRC64;
MLKSSNFALA NVMDALIKNP SIFFVVVDAD ARITTISQTL LDILEMTEDE VLGRDIGEII
PDGKLTRVLE TGCIDEADVV EINGHNTIVN RVPIIKEGRI IGAVASSLFL DISYAQELID
KFNETEPKTD PELDTIINEL IDSPAVGYII IDRNGHVSHV NQTYLDVLAK SRRDVIGKHV
KDITPHSRLP RILESGRVDK VDIWSVNNHH MIVNRLPIVK DHQVIGAIGH TLTLDVTAHE
FLMDKLQENN EFNIIFQGLI ENPYTAYVIV DHLGYITIVN NTFLKLLKMP REAVIGKYIL
DIVPNSKLPE ILATGRTDKA DIWGLHPDED IIVDRLPIKK DGQIIGAIAH SVVLDMNEVK
SLIRRLQDTQ KELFIYKEEI RSIYKAKWQF EDLIGQSREF TNIKDMARQF SKTSSTLLIT
GESGTGKELF AQAVHNASSR SLGPFIRINC AALPENLLES ELFGYEEGAF TGAKKGGKPG
KFELAKGGTI FLDEIGDMPF NMQTKLLAVL QERVVERVGG TSPIDINVRV IAATNRDLEK
MINNHEFRED LYYRLNVVQL RIPPLRKRLD DLPLLAYSLI VRLNHHLGTS VNSISDEAME
ILRNYTWPGN VRELENLLER AINLAHMNFR NCIQKADLPS LYNDKYDLDA ATEINEEKTL
AEKIEDIEKE LIIQALTKSG NNKSKTAKLL GIHSSALYRK LNKYGLS
//
