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Entry: A0A0F3IM28_9GAMM
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ID   A0A0F3IM28_9GAMM        Unreviewed;       466 AA.
AC   A0A0F3IM28;
DT   24-JUN-2015, integrated into UniProtKB/TrEMBL.
DT   24-JUN-2015, sequence version 1.
DT   08-NOV-2023, entry version 39.
DE   RecName: Full=GTPase Der {ECO:0000256|ARBA:ARBA00020953, ECO:0000256|HAMAP-Rule:MF_00195};
DE   AltName: Full=GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195};
GN   Name=der {ECO:0000256|HAMAP-Rule:MF_00195};
GN   ORFNames=VZ94_02480 {ECO:0000313|EMBL:KJV07796.1};
OS   Methylocucumis oryzae.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Methylococcales;
OC   Methylococcaceae; Methylocucumis.
OX   NCBI_TaxID=1632867 {ECO:0000313|EMBL:KJV07796.1, ECO:0000313|Proteomes:UP000033684};
RN   [1] {ECO:0000313|Proteomes:UP000033684}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Sn10-6 {ECO:0000313|Proteomes:UP000033684};
RA   Pandit P.S., Pore S.D., Arora P., Kapse N.G., Dhakephalkar P.K.,
RA   Rahalkar M.C.;
RT   "Draft genome sequence of a novel methanotroph (Sn10-6) isolated from
RT   flooded ricefield rhizosphere in India.";
RL   Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:KJV07796.1, ECO:0000313|Proteomes:UP000033684}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Sn10-6 {ECO:0000313|EMBL:KJV07796.1,
RC   ECO:0000313|Proteomes:UP000033684};
RX   PubMed=26547566; DOI=10.1007/s00248-015-0699-z;
RA   Rahalkar M.C., Pandit P.S., Dhakephalkar P.K., Pore S., Arora P., Kapse N.;
RT   "Genome Characteristics of a Novel Type I Methanotroph (Sn10-6) Isolated
RT   from a Flooded Indian Rice Field.";
RL   Microb. Ecol. 71:519-523(2016).
CC   -!- FUNCTION: GTPase that plays an essential role in the late steps of
CC       ribosome biogenesis. {ECO:0000256|HAMAP-Rule:MF_00195,
CC       ECO:0000256|RuleBase:RU004481}.
CC   -!- SUBUNIT: Associates with the 50S ribosomal subunit. {ECO:0000256|HAMAP-
CC       Rule:MF_00195}.
CC   -!- SIMILARITY: Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like
CC       GTPase superfamily. EngA (Der) GTPase family.
CC       {ECO:0000256|ARBA:ARBA00008279, ECO:0000256|HAMAP-Rule:MF_00195,
CC       ECO:0000256|PROSITE-ProRule:PRU01049, ECO:0000256|RuleBase:RU004481}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KJV07796.1}.
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DR   EMBL; LAJX01000017; KJV07796.1; -; Genomic_DNA.
DR   RefSeq; WP_045778022.1; NZ_LAJX01000017.1.
DR   AlphaFoldDB; A0A0F3IM28; -.
DR   PATRIC; fig|1632867.3.peg.1786; -.
DR   OrthoDB; 9805918at2; -.
DR   Proteomes; UP000033684; Unassembled WGS sequence.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   GO; GO:0005525; F:GTP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
DR   CDD; cd01894; EngA1; 1.
DR   CDD; cd01895; EngA2; 1.
DR   Gene3D; 3.30.300.20; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR   HAMAP; MF_00195; GTPase_Der; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR031166; G_ENGA.
DR   InterPro; IPR006073; GTP-bd.
DR   InterPro; IPR016484; GTPase_Der.
DR   InterPro; IPR032859; KH_dom-like.
DR   InterPro; IPR015946; KH_dom-like_a/b.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR005225; Small_GTP-bd_dom.
DR   NCBIfam; TIGR03594; GTPase_EngA; 1.
DR   NCBIfam; TIGR00231; small_GTP; 2.
DR   PANTHER; PTHR43834:SF6; GTP-BINDING PROTEIN ENGA; 1.
DR   PANTHER; PTHR43834; GTPASE DER; 1.
DR   Pfam; PF14714; KH_dom-like; 1.
DR   Pfam; PF01926; MMR_HSR1; 2.
DR   PIRSF; PIRSF006485; GTP-binding_EngA; 1.
DR   PRINTS; PR00326; GTP1OBG.
DR   SMART; SM00382; AAA; 2.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR   PROSITE; PS51712; G_ENGA; 2.
PE   3: Inferred from homology;
KW   GTP-binding {ECO:0000256|ARBA:ARBA00023134, ECO:0000256|HAMAP-
KW   Rule:MF_00195};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741, ECO:0000256|HAMAP-
KW   Rule:MF_00195}; Reference proteome {ECO:0000313|Proteomes:UP000033684};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737, ECO:0000256|RuleBase:RU004481};
KW   Ribosome biogenesis {ECO:0000256|ARBA:ARBA00022517, ECO:0000256|HAMAP-
KW   Rule:MF_00195}.
FT   DOMAIN          3..166
FT                   /note="EngA-type G"
FT                   /evidence="ECO:0000259|PROSITE:PS51712"
FT   DOMAIN          178..351
FT                   /note="EngA-type G"
FT                   /evidence="ECO:0000259|PROSITE:PS51712"
FT   BINDING         9..16
FT                   /ligand="GTP"
FT                   /ligand_id="ChEBI:CHEBI:37565"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00195"
FT   BINDING         56..60
FT                   /ligand="GTP"
FT                   /ligand_id="ChEBI:CHEBI:37565"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00195"
FT   BINDING         118..121
FT                   /ligand="GTP"
FT                   /ligand_id="ChEBI:CHEBI:37565"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00195"
FT   BINDING         184..191
FT                   /ligand="GTP"
FT                   /ligand_id="ChEBI:CHEBI:37565"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00195"
FT   BINDING         231..235
FT                   /ligand="GTP"
FT                   /ligand_id="ChEBI:CHEBI:37565"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00195"
FT   BINDING         296..299
FT                   /ligand="GTP"
FT                   /ligand_id="ChEBI:CHEBI:37565"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00195"
SQ   SEQUENCE   466 AA;  51435 MW;  017CD4CBE7BCC8E3 CRC64;
     MLPVIALVGR PNVGKSTLFN YLTRSREALV ADIPGLTRDR QYGRIQHGMR PCLVVDTGGI
     ADDAEGIESI SRKQVQIALN EANLVVFMVD AREGISASDK VIADSLRKLG KPILLVTNKV
     DGIDAPTATA EFHSLALGEP ILLAASHGRG VPALLEKINQ LLPSAAELID DEGARKGIGI
     AVIGRPNVGK STLVNRILGE ERVIVFDQPG TTRDSVYIPF EREGKQFTLI DTAGMRRRSR
     IAETIEKFSV IKALQAIDKA HVVIYLIDAS EGVTDQDAHL LGLVLEAGRT LIIGLNKWDG
     LTTEQKDKVK RQIELKLPFV DFAEKHPISA LHGSGVGKLF DVVHSLFESA MVNLSTSTLN
     RILKEATDAH QPPMVQNRRI KLKYAHQGGR NPPVIIVHGV QTEALPLSYH RYLTNYFRER
     LQLAGTPLRL EFKTTANPFQ GKKNTLTERQ VQKRQRLFKH VKKKNG
//
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