ID A0A0F4GND2_9PEZI Unreviewed; 1490 AA.
AC A0A0F4GND2;
DT 24-JUN-2015, integrated into UniProtKB/TrEMBL.
DT 24-JUN-2015, sequence version 1.
DT 24-JAN-2024, entry version 32.
DE RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
GN ORFNames=TI39_contig468g00026 {ECO:0000313|EMBL:KJX97710.1};
OS Zymoseptoria brevis.
OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes;
OC Dothideomycetidae; Mycosphaerellales; Mycosphaerellaceae; Zymoseptoria.
OX NCBI_TaxID=1047168 {ECO:0000313|EMBL:KJX97710.1, ECO:0000313|Proteomes:UP000033647};
RN [1] {ECO:0000313|EMBL:KJX97710.1, ECO:0000313|Proteomes:UP000033647}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Zb18110 {ECO:0000313|EMBL:KJX97710.1,
RC ECO:0000313|Proteomes:UP000033647};
RA Grandaubert J., Bhattacharyya A., Stukenbrock E.H.;
RT "RNA-seq based gene annotation and comparative genomics of four
RT Zymoseptoria species reveal species-specific pathogenicity related genes
RT and transposable element activity.";
RL Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000256|RuleBase:RU004279}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC ECO:0000256|RuleBase:RU004279};
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC {ECO:0000256|RuleBase:RU004279}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KJX97710.1}.
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DR EMBL; LAFY01000460; KJX97710.1; -; Genomic_DNA.
DR STRING; 1047168.A0A0F4GND2; -.
DR OrthoDB; 169836at2759; -.
DR Proteomes; UP000033647; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd02736; RNAP_III_Rpc1_C; 1.
DR CDD; cd02583; RNAP_III_RPC1_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 6.10.250.2940; -; 1.
DR Gene3D; 6.20.50.80; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007080; RNA_pol_Rpb1_1.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR035698; RNAP_III_Rpc1_C.
DR InterPro; IPR035697; RNAP_III_RPC1_N.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000256|RuleBase:RU004279};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000033647};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|RuleBase:RU004279};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279}.
FT DOMAIN 270..577
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
SQ SEQUENCE 1490 AA; 165120 MW; 3E0BF4FBA2B28498 CRC64;
MDNSASADDF TSKEQVIDQV PKRIKSLQFG LLSPSDIIAQ SVVPVADRNL YDLATQPGAG
RSITKHGPLD QRLGTSSKNG LCGTCGQGLK ECNGHFGHVK LALPCFHYGY IKKVIDALNC
VCKECSRVLL PEKDKRAYLK SLRRPGLDGL RKEVLTKKIS AECRKVKVCP HCSAFNGPVR
KVPGHPVKMF HNKYAIYTNS NAKSKVKPAH MQAFEATFEE AIKANPEIER HMKRAADDLT
PLRVLNILKK VPNADVELLG MDPHSGGRPE YMIWTSIPAP PVAIRPSVAQ ETASTEDDIT
NKLGDIIQIN SLMIATLRAG QQLSKVMDMW EFLQVQIAMY IDGNIPGLAR DSSYGKAMRG
FCQRLKGKQG RFRGNLSGKR VDFSGRTVIS PDPNLSIDEV AVPMRVAVNM TYPERVTKHN
FEKLKACVRR GDKVHPGANF IVKGRDGRRV VLRMVGLKGD LKKVADQLEI GDTVERHLED
GDIVLFNRQP SLHKLSILSH RAKIRPWRTF RLNECVCNPY NADFDGDEMN LHVPQTEEAR
TEATELMGVK HNLATPKNGT PIIAAIQDFI TGAFLISRKD QFFNRRQFNQ AVTFMYDGLQ
VKDPLTGETH NIEIPAPAIW KPQTLWTGKQ IWDVLMKPHR HYPVNVNLEA KLKSFAPPKR
KGDIDDMVDS DSYLVIRNSV TMCGGFDKAT VGDGKKTSVF YVIMRDFGVD YAAAAMTRLA
KLSARWLGEQ GFSIGISDVY PSDKLNLRKK ELVDAAYRQC DEIIDKFKKG QLERSAGCDE
EQTMEILMSG ILSAVRQQCG DACFAELSKF NAPLTMAKCG SKGSNINVSQ MVAAVGQQII
GGKRVLDGFQ DRTLPHFPKA SRDPLAKGFV VDSFFSGLSP TEFIFHAMSG REGLVDTAVK
TAETGYMSRR LMKSLEDLSA QYDLTVRNSS SGVVQMKFGD DGLDPVDMEG NAKPVNFDRT
WMHAITSTWD NSERGLTQAE IAEMVHETLD KERAKLVRIT DDGLPLPYED ATPKSTDQLE
YSRTFLDDVT NYIFKHVRKL VSSQHRHRGS DDVFKLSQSA LECFLYLCLR KFEKSKVEAG
HAVGAVGAQS IGEPGTQMTL KTFHFAGVAG MSITQGVPRI KEIINASKSI STPVITCALD
SPYEEMAGRF AKALIEKTYL GDIVDYIEDV WHAHGCYINM RVNWEQVENL GLRITMWHIT
EAINRSKGFK SMGVSASASE SHIRVRLTLP DSSKLRKAAA TKHLRFSDND DSEVLFMQIH
TLKRKLPAVV VKGYPDAARA IMKKDDKADA SGREPISVLV EGYGLKACMT TDGVDGYRTK
SNNVMECKDV LGIEAARKTI IDEISAVMGG MDIDPRHMQL LADVMTYKGE VLGITRFGLA
KMRDSVLQLA SFEKTPDHLF EAAAKMKKDD IEGVSECIIM GQVMGVGTGA MKVVRPLHLT
GEVNHVGNIT FKGEVKAGLA ARKERARERR EKLLGREGVN GHAAPVAVGA
//
