ID A0A0G1GA45_9BACT Unreviewed; 549 AA.
AC A0A0G1GA45;
DT 22-JUL-2015, integrated into UniProtKB/TrEMBL.
DT 22-JUL-2015, sequence version 1.
DT 13-SEP-2023, entry version 34.
DE RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN ORFNames=UW18_C0005G0020 {ECO:0000313|EMBL:KKT31248.1};
OS Microgenomates group bacterium GW2011_GWF1_44_10.
OC Bacteria.
OX NCBI_TaxID=1618537 {ECO:0000313|EMBL:KKT31248.1, ECO:0000313|Proteomes:UP000034538};
RN [1] {ECO:0000313|EMBL:KKT31248.1, ECO:0000313|Proteomes:UP000034538}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Brown C.T., Hug L.A., Thomas B.C., Sharon I., Castelle C.J., Singh A.,
RA Wilkins M.J., Williams K.H., Banfield J.F.;
RT "rRNA introns, odd ribosomes, and small enigmatic genomes across a large
RT radiation of phyla.";
RL Nature 0:0-0(2015).
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC Rule:MF_00335}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KKT31248.1}.
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DR EMBL; LCHI01000005; KKT31248.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0G1GA45; -.
DR PATRIC; fig|1618537.3.peg.683; -.
DR Proteomes; UP000034538; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR CDD; cd22431; KH-I_RNaseY; 1.
DR Gene3D; 3.30.310.210; -; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR InterPro; IPR022711; RNase_Y_N.
DR NCBIfam; TIGR00277; HDIG; 1.
DR NCBIfam; TIGR03319; RNase_Y; 1.
DR PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF12072; RNase_Y_N; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR PROSITE; PS51831; HD; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00335};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_00335}.
FT DOMAIN 366..458
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
FT REGION 15..87
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 96..225
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 15..43
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 51..85
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 549 AA; 62239 MW; 96BAF4945763299E CRC64;
MSFFSKLSTL FSNTQNAPAD THAQAKSTTQ LQPQPQAQLS RQPVMQPRVA HPHQTHQQNR
QPKQQPPHQQ TQQTQPNQQQ LDSAVREAQA RAKEIIVEAK DEALQIREKA EKESREQRRE
LSDKEKIVDQ KIFSIDSRLK ALDEKEETLE KKKADIAKLQ TQAEETQQKL LDKLEKVAGL
TRDQAKQQIL EGVEKSLTQE VARRIQEAEN KAKEEADEKA QEILIDAMRH GATDYVAEYT
VSTVILPDDE VKGRIIGKDG RNIRSFEQAT GVDVDLDDTP GQVRLSSFNP VRREIARITL
ERLIKDGRIQ PTRIEETVKK VTEELQKIMF EEGKKLCHAV GVYNMPSELI QMLGKFKYRF
SYGQNLIAHT LEETQIGIKL ARETGANVET VKLGCLLHDI GKVVDSEEGS HIELGVELLK
KYRIPKVVID CVEQHHEDVP FSSVESVLVY IADAISGSRP GARYENYDEY VKRLTKLEDI
AKGYEQVQSA YAIQAGREVR VILKGDASKD DDVIVLSHTI KDRVQKEMTY PGTVTVTVIR
EMRGVDIAK
//
