ID A0A0G9HE70_9GAMM Unreviewed; 702 AA.
AC A0A0G9HE70;
DT 16-SEP-2015, integrated into UniProtKB/TrEMBL.
DT 16-SEP-2015, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE SubName: Full=Glycogen debranching enzyme GlgX {ECO:0000313|EMBL:APG05182.1};
DE SubName: Full=Glycogen debranching protein {ECO:0000313|EMBL:KLD67806.1};
GN ORFNames=BJI69_15600 {ECO:0000313|EMBL:APG05182.1}, Y883_05250
GN {ECO:0000313|EMBL:KLD67806.1};
OS Luteibacter rhizovicinus DSM 16549.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales;
OC Rhodanobacteraceae; Luteibacter.
OX NCBI_TaxID=1440763 {ECO:0000313|EMBL:APG05182.1, ECO:0000313|Proteomes:UP000182987};
RN [1] {ECO:0000313|EMBL:KLD67806.1, ECO:0000313|Proteomes:UP000035585}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 16549 {ECO:0000313|EMBL:KLD67806.1,
RC ECO:0000313|Proteomes:UP000035585};
RX PubMed=25481407; DOI=10.1007/s10482-014-0344-8;
RA Naushad S., Adeolu M., Wong S., Sohail M., Schellhorn H.E., Gupta R.S.;
RT "A phylogenomic and molecular marker based taxonomic framework for the
RT order Xanthomonadales: proposal to transfer the families Algiphilaceae and
RT Solimonadaceae to the order Nevskiales ord. nov. and to create a new family
RT within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov.,
RT containing the genus Rhodanobacter and its closest relatives.";
RL Antonie Van Leeuwenhoek 107:467-485(2015).
RN [2] {ECO:0000313|EMBL:APG05182.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=LJ96 {ECO:0000313|EMBL:APG05182.1};
RX PubMed=28123952;
RA Aamot H.U., Hofgaard I.S., Lysoe E.;
RT "Complete genome sequence of Luteibacter rhizovicinus strain LJ96T,
RT isolated from the rhizosphere of barley (Hordeum vulgare L.) in Denmark.";
RL Genom Data 11:104-105(2016).
RN [3] {ECO:0000313|Proteomes:UP000182987}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=LJ96T {ECO:0000313|Proteomes:UP000182987};
RA Capua I., De Benedictis P., Joannis T., Lombin L.H., Cattoli G.;
RL Submitted (SEP-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 13 family.
CC {ECO:0000256|ARBA:ARBA00008061}.
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DR EMBL; CP017480; APG05182.1; -; Genomic_DNA.
DR EMBL; JPLB01000017; KLD67806.1; -; Genomic_DNA.
DR RefSeq; WP_046966704.1; NZ_JPLB01000017.1.
DR AlphaFoldDB; A0A0G9HE70; -.
DR STRING; 1440763.BJI69_15600; -.
DR KEGG; lrz:BJI69_15600; -.
DR PATRIC; fig|1440763.5.peg.755; -.
DR OrthoDB; 3236218at2; -.
DR Proteomes; UP000035585; Unassembled WGS sequence.
DR Proteomes; UP000182987; Chromosome.
DR GO; GO:0004133; F:glycogen debranching enzyme activity; IEA:InterPro.
DR GO; GO:0004553; F:hydrolase activity, hydrolyzing O-glycosyl compounds; IEA:InterPro.
DR GO; GO:0005980; P:glycogen catabolic process; IEA:InterPro.
DR CDD; cd11326; AmyAc_Glg_debranch; 1.
DR CDD; cd02856; E_set_GDE_Isoamylase_N; 1.
DR Gene3D; 3.20.20.80; Glycosidases; 1.
DR Gene3D; 2.60.40.1180; Golgi alpha-mannosidase II; 1.
DR Gene3D; 2.60.40.10; Immunoglobulins; 1.
DR InterPro; IPR044505; GlgX_Isoamylase_N_E_set.
DR InterPro; IPR006047; Glyco_hydro_13_cat_dom.
DR InterPro; IPR004193; Glyco_hydro_13_N.
DR InterPro; IPR013780; Glyco_hydro_b.
DR InterPro; IPR011837; Glycogen_debranch_GlgX.
DR InterPro; IPR017853; Glycoside_hydrolase_SF.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR014756; Ig_E-set.
DR NCBIfam; TIGR02100; glgX_debranch; 1.
DR PANTHER; PTHR43002; GLYCOGEN DEBRANCHING ENZYME; 1.
DR PANTHER; PTHR43002:SF9; GLYCOSYL HYDROLASE-RELATED; 1.
DR Pfam; PF00128; Alpha-amylase; 1.
DR Pfam; PF02922; CBM_48; 1.
DR SMART; SM00642; Aamy; 1.
DR SUPFAM; SSF51445; (Trans)glycosidases; 1.
DR SUPFAM; SSF81296; E set domains; 1.
DR SUPFAM; SSF51011; Glycosyl hydrolase domain; 1.
PE 3: Inferred from homology;
FT DOMAIN 168..576
FT /note="Glycosyl hydrolase family 13 catalytic"
FT /evidence="ECO:0000259|SMART:SM00642"
FT REGION 470..497
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 470..487
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 702 AA; 79084 MW; 4F4B0B20EC1DAF93 CRC64;
MPALPERMQS GTPYPLGATC DGMGTNFAVF SAHAERIELC LFDPSGKREI ARYELPECTD
EIWHGYLPRV RGGTLYGFRA YGPYQPEEGH RFNPNKLLLD PYARLLHGQV RWSDALHGYR
VSSPRADLSF DRRDSAVAMP KAVVVDEPMH WTGGNRPHTP WNETVIYETH LRGFTRTLKR
IRQNERGTFI ALADPYVIDY LVKLGITAVE LLPVHAFVQD RRLTEMKLRN YWGYNTLAFF
APEPGYMAEG ALNEIRAAVQ ALHAAGIEVI LDVVYNHTCE GSELGTTMSF RGLDNKSYYR
LMPDNPRYCI NDTGTGNTVN TAHPRVIQLV MDSLRYWVQT FHIDGFRFDL GVSLGREENG
FDPCCGLFDA MRQDPVLANV KLISEPWDIG PGGYQLGNHP PGFAEWNGQF RDDIRKFWKG
DSNMRGVLAG RLQASGELFD HQRRKPWASV NFVTAHDGFT LEDLVSYNDK HNDANGEDNR
DGGNDNESYN HGVEGPTDDS AIVLQRDRVK RAMLATMFFS HGTPMLLGGD EFGRTQQGNN
NAYCQDNELS WYDWKLATSE QGRELTDFVA RLARLREQHP TLRAAHFLRG DKEVAPGMRE
VAWFDESGAE MTQATWGYTE GRLLALRRAQ AYGEKRADVT VVLINATPET HVFHLPQPAV
SWRLRCNTAS PSASEVPWTE PTIAVAGHSV ILLGTIVRTE PA
//
