ID A0A0J8RNT3_COCIT Unreviewed; 695 AA.
AC A0A0J8RNT3;
DT 14-OCT-2015, integrated into UniProtKB/TrEMBL.
DT 14-OCT-2015, sequence version 1.
DT 24-JAN-2024, entry version 31.
DE SubName: Full=60S ribosomal protein L40 {ECO:0000313|EMBL:KMU85639.1};
GN ORFNames=CIHG_03679 {ECO:0000313|EMBL:KMU85639.1};
OS Coccidioides immitis H538.4.
OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes;
OC Eurotiomycetidae; Onygenales; Onygenaceae; Coccidioides.
OX NCBI_TaxID=396776 {ECO:0000313|EMBL:KMU85639.1, ECO:0000313|Proteomes:UP000054563};
RN [1] {ECO:0000313|Proteomes:UP000054563}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=H538.4 {ECO:0000313|Proteomes:UP000054563};
RX PubMed=20516208; DOI=10.1101/gr.103911.109;
RA Neafsey D.E., Barker B.M., Sharpton T.J., Stajich J.E., Park D.J.,
RA Whiston E., Hung C.-Y., McMahan C., White J., Sykes S., Heiman D.,
RA Young S., Zeng Q., Abouelleil A., Aftuck L., Bessette D., Brown A.,
RA FitzGerald M., Lui A., Macdonald J.P., Priest M., Orbach M.J.,
RA Galgiani J.N., Kirkland T.N., Cole G.T., Birren B.W., Henn M.R.,
RA Taylor J.W., Rounsley S.D.;
RT "Population genomic sequencing of Coccidioides fungi reveals recent
RT hybridization and transposon control.";
RL Genome Res. 20:938-946(2010).
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC -!- SIMILARITY: In the C-terminal section; belongs to the eukaryotic
CC ribosomal protein eL40 family. {ECO:0000256|ARBA:ARBA00010570}.
CC -!- SIMILARITY: In the N-terminal section; belongs to the ubiquitin family.
CC {ECO:0000256|ARBA:ARBA00008373}.
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DR EMBL; DS016989; KMU85639.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0J8RNT3; -.
DR STRING; 396776.A0A0J8RNT3; -.
DR VEuPathDB; FungiDB:CIHG_03679; -.
DR Proteomes; UP000054563; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd01803; Ubl_ubiquitin; 1.
DR Gene3D; 4.10.1060.50; -; 1.
DR InterPro; IPR001975; Ribosomal_eL40_dom.
DR InterPro; IPR038587; Ribosomal_eL40_sf.
DR InterPro; IPR048538; Rrn7_cyclin_C.
DR InterPro; IPR048540; Rrn7_cyclin_N.
DR InterPro; IPR000626; Ubiquitin-like_dom.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR InterPro; IPR019954; Ubiquitin_CS.
DR InterPro; IPR019956; Ubiquitin_dom.
DR PANTHER; PTHR10666; UBIQUITIN; 1.
DR PANTHER; PTHR10666:SF451; UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF01020; Ribosomal_L40e; 1.
DR Pfam; PF20645; Rrn7_cyclin_C; 1.
DR Pfam; PF20644; Rrn7_cyclin_N; 1.
DR Pfam; PF00240; ubiquitin; 1.
DR PRINTS; PR00348; UBIQUITIN.
DR SMART; SM01377; Ribosomal_L40e; 1.
DR SMART; SM00213; UBQ; 1.
DR SUPFAM; SSF54236; Ubiquitin-like; 1.
DR PROSITE; PS00299; UBIQUITIN_1; 1.
DR PROSITE; PS50053; UBIQUITIN_2; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Reference proteome {ECO:0000313|Proteomes:UP000054563};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980,
KW ECO:0000313|EMBL:KMU85639.1}.
FT DOMAIN 562..643
FT /note="Ubiquitin-like"
FT /evidence="ECO:0000259|PROSITE:PS50053"
FT REGION 462..494
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 477..491
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 695 AA; 79847 MW; 3895AD8983F32D77 CRC64;
MVVGKRATTW KTVYGSADRG ISRRGLPGEL EAGTSITELL ITWQLIVKDL WALRLQKLYE
REDDNYRSDD NISQLFSSQT EWTELDDEEY RYHRRKLSDS PKVIDAVALC YLVSDICKGI
PQKTDTEAFK LGLILLPLRR WIVRDDIPFL RLSRFVPQDM KERLPAVYHN VLDPRNVPTG
DQLHRAVADL ADLYSRDFGV TFPRINLPLL LFSYIKQLAL PLEIYPAVSR LKELSGFEFC
FSRQPGRFNR VSLPEVQLMS LVIIAAKLLY PLDDIKRYPD SLQDPAAQII DWEAWVETQK
EFDLRGKNTE RLTRGCEIKV DESDVLQMTP AQLDDYMDWY SKMWIDTKKG TNPFADMFQT
DRVDTDEVNP MPPPDDDDDG PEISKKLHKM LSRMKMRRVV ADADVMALAE PVARPGSSYK
RYRNESQLSE YAKAFYQAAA QVIGASLETM VYTVYRTEHR IQNPDGTRSS SRSKSRSRSK
KPNEEMADCD IKSGYDPANY DTTFSNHSTE WSGLHGNSQE TAVPGSLGPM RKLGFRAYYI
RHAHPLSETP FKSWTFSTTK QRTARQQQVN PQPILTFKTI TLEVESSDTI DNVKSKIQDK
EGIPPDQQRL IFAGKQLEDG RTLSDYNIQK ESTLHLVLRL RGGIIEPSLK ALASKYNCEK
MICRKCYARL PPRATNCRKK KCGHTNQLRP KKKLK
//