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Database: UniProt
Entry: A0A0J8RNT3_COCIT
LinkDB: A0A0J8RNT3_COCIT
Original site: A0A0J8RNT3_COCIT 
ID   A0A0J8RNT3_COCIT        Unreviewed;       695 AA.
AC   A0A0J8RNT3;
DT   14-OCT-2015, integrated into UniProtKB/TrEMBL.
DT   14-OCT-2015, sequence version 1.
DT   24-JAN-2024, entry version 31.
DE   SubName: Full=60S ribosomal protein L40 {ECO:0000313|EMBL:KMU85639.1};
GN   ORFNames=CIHG_03679 {ECO:0000313|EMBL:KMU85639.1};
OS   Coccidioides immitis H538.4.
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes;
OC   Eurotiomycetidae; Onygenales; Onygenaceae; Coccidioides.
OX   NCBI_TaxID=396776 {ECO:0000313|EMBL:KMU85639.1, ECO:0000313|Proteomes:UP000054563};
RN   [1] {ECO:0000313|Proteomes:UP000054563}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=H538.4 {ECO:0000313|Proteomes:UP000054563};
RX   PubMed=20516208; DOI=10.1101/gr.103911.109;
RA   Neafsey D.E., Barker B.M., Sharpton T.J., Stajich J.E., Park D.J.,
RA   Whiston E., Hung C.-Y., McMahan C., White J., Sykes S., Heiman D.,
RA   Young S., Zeng Q., Abouelleil A., Aftuck L., Bessette D., Brown A.,
RA   FitzGerald M., Lui A., Macdonald J.P., Priest M., Orbach M.J.,
RA   Galgiani J.N., Kirkland T.N., Cole G.T., Birren B.W., Henn M.R.,
RA   Taylor J.W., Rounsley S.D.;
RT   "Population genomic sequencing of Coccidioides fungi reveals recent
RT   hybridization and transposon control.";
RL   Genome Res. 20:938-946(2010).
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC   -!- SIMILARITY: In the C-terminal section; belongs to the eukaryotic
CC       ribosomal protein eL40 family. {ECO:0000256|ARBA:ARBA00010570}.
CC   -!- SIMILARITY: In the N-terminal section; belongs to the ubiquitin family.
CC       {ECO:0000256|ARBA:ARBA00008373}.
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DR   EMBL; DS016989; KMU85639.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0J8RNT3; -.
DR   STRING; 396776.A0A0J8RNT3; -.
DR   VEuPathDB; FungiDB:CIHG_03679; -.
DR   Proteomes; UP000054563; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:InterPro.
DR   CDD; cd01803; Ubl_ubiquitin; 1.
DR   Gene3D; 4.10.1060.50; -; 1.
DR   InterPro; IPR001975; Ribosomal_eL40_dom.
DR   InterPro; IPR038587; Ribosomal_eL40_sf.
DR   InterPro; IPR048538; Rrn7_cyclin_C.
DR   InterPro; IPR048540; Rrn7_cyclin_N.
DR   InterPro; IPR000626; Ubiquitin-like_dom.
DR   InterPro; IPR029071; Ubiquitin-like_domsf.
DR   InterPro; IPR019954; Ubiquitin_CS.
DR   InterPro; IPR019956; Ubiquitin_dom.
DR   PANTHER; PTHR10666; UBIQUITIN; 1.
DR   PANTHER; PTHR10666:SF451; UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF01020; Ribosomal_L40e; 1.
DR   Pfam; PF20645; Rrn7_cyclin_C; 1.
DR   Pfam; PF20644; Rrn7_cyclin_N; 1.
DR   Pfam; PF00240; ubiquitin; 1.
DR   PRINTS; PR00348; UBIQUITIN.
DR   SMART; SM01377; Ribosomal_L40e; 1.
DR   SMART; SM00213; UBQ; 1.
DR   SUPFAM; SSF54236; Ubiquitin-like; 1.
DR   PROSITE; PS00299; UBIQUITIN_1; 1.
DR   PROSITE; PS50053; UBIQUITIN_2; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW   Reference proteome {ECO:0000313|Proteomes:UP000054563};
KW   Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW   Ribosomal protein {ECO:0000256|ARBA:ARBA00022980,
KW   ECO:0000313|EMBL:KMU85639.1}.
FT   DOMAIN          562..643
FT                   /note="Ubiquitin-like"
FT                   /evidence="ECO:0000259|PROSITE:PS50053"
FT   REGION          462..494
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        477..491
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   695 AA;  79847 MW;  3895AD8983F32D77 CRC64;
     MVVGKRATTW KTVYGSADRG ISRRGLPGEL EAGTSITELL ITWQLIVKDL WALRLQKLYE
     REDDNYRSDD NISQLFSSQT EWTELDDEEY RYHRRKLSDS PKVIDAVALC YLVSDICKGI
     PQKTDTEAFK LGLILLPLRR WIVRDDIPFL RLSRFVPQDM KERLPAVYHN VLDPRNVPTG
     DQLHRAVADL ADLYSRDFGV TFPRINLPLL LFSYIKQLAL PLEIYPAVSR LKELSGFEFC
     FSRQPGRFNR VSLPEVQLMS LVIIAAKLLY PLDDIKRYPD SLQDPAAQII DWEAWVETQK
     EFDLRGKNTE RLTRGCEIKV DESDVLQMTP AQLDDYMDWY SKMWIDTKKG TNPFADMFQT
     DRVDTDEVNP MPPPDDDDDG PEISKKLHKM LSRMKMRRVV ADADVMALAE PVARPGSSYK
     RYRNESQLSE YAKAFYQAAA QVIGASLETM VYTVYRTEHR IQNPDGTRSS SRSKSRSRSK
     KPNEEMADCD IKSGYDPANY DTTFSNHSTE WSGLHGNSQE TAVPGSLGPM RKLGFRAYYI
     RHAHPLSETP FKSWTFSTTK QRTARQQQVN PQPILTFKTI TLEVESSDTI DNVKSKIQDK
     EGIPPDQQRL IFAGKQLEDG RTLSDYNIQK ESTLHLVLRL RGGIIEPSLK ALASKYNCEK
     MICRKCYARL PPRATNCRKK KCGHTNQLRP KKKLK
//
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