ID A0A0K9PYT5_ZOSMR Unreviewed; 789 AA.
AC A0A0K9PYT5;
DT 11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT 11-NOV-2015, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE SubName: Full=Putative RNA binding protein {ECO:0000313|EMBL:KMZ73400.1};
GN ORFNames=ZOSMA_14G01650 {ECO:0000313|EMBL:KMZ73400.1};
OS Zostera marina (Eelgrass).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Zosteraceae; Zostera.
OX NCBI_TaxID=29655 {ECO:0000313|EMBL:KMZ73400.1, ECO:0000313|Proteomes:UP000036987};
RN [1] {ECO:0000313|Proteomes:UP000036987}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Finnish {ECO:0000313|Proteomes:UP000036987};
RX PubMed=26814964; DOI=10.1038/nature16548;
RA Olsen J.L., Rouze P., Verhelst B., Lin Y.-C., Bayer T., Collen J.,
RA Dattolo E., De Paoli E., Dittami S., Maumus F., Michel G., Kersting A.,
RA Lauritano C., Lohaus R., Toepel M., Tonon T., Vanneste K., Amirebrahimi M.,
RA Brakel J., Bostroem C., Chovatia M., Grimwood J., Jenkins J.W.,
RA Jueterbock A., Mraz A., Stam W.T., Tice H., Bornberg-Bauer E., Green P.J.,
RA Pearson G.A., Procaccini G., Duarte C.M., Schmutz J., Reusch T.B.H.,
RA Van de Peer Y.;
RT "The genome of the seagrass Zostera marina reveals angiosperm adaptation to
RT the sea.";
RL Nature 530:331-335(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KMZ73400.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; LFYR01000585; KMZ73400.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0K9PYT5; -.
DR STRING; 29655.A0A0K9PYT5; -.
DR OMA; QHYRRKL; -.
DR OrthoDB; 9814at2759; -.
DR Proteomes; UP000036987; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd12223; RRM_SR140; 1.
DR Gene3D; 1.25.40.90; -; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.10.10.790; Surp module; 1.
DR InterPro; IPR006569; CID_dom.
DR InterPro; IPR008942; ENTH_VHS.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR003034; SAP_dom.
DR InterPro; IPR035009; SR140_RRM.
DR InterPro; IPR000061; Surp.
DR InterPro; IPR035967; SWAP/Surp_sf.
DR PANTHER; PTHR23140; RNA PROCESSING PROTEIN LD23810P; 1.
DR PANTHER; PTHR23140:SF0; U2 SNRNP-ASSOCIATED SURP MOTIF-CONTAINING PROTEIN; 1.
DR Pfam; PF04818; CID; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF01805; Surp; 1.
DR SMART; SM00582; RPR; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00648; SWAP; 1.
DR SUPFAM; SSF48464; ENTH/VHS domain; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR SUPFAM; SSF109905; Surp module (SWAP domain); 1.
DR PROSITE; PS51391; CID; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50800; SAP; 1.
DR PROSITE; PS50128; SURP; 1.
PE 4: Predicted;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW Reference proteome {ECO:0000313|Proteomes:UP000036987};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 186..267
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 335..378
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
FT DOMAIN 443..588
FT /note="CID"
FT /evidence="ECO:0000259|PROSITE:PS51391"
FT DOMAIN 623..657
FT /note="SAP"
FT /evidence="ECO:0000259|PROSITE:PS50800"
FT REGION 1..158
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 700..789
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 11..40
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 54..75
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 98..149
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 700..730
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 736..750
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 789 AA; 88641 MW; D2656F9709A59D90 CRC64;
MNSFSIVRKK TPFQKHKEEE QAKKKRDKEE NERLYREFVE SFEGDGNAPG SKTFVRGGTI
NPNEKLKNSS EGGVSKDGIS VPKKGSRYTP SFIPPPMETK RRESDKKEEK PREKEKGKTR
NIDKFMEELK NEQDRRDKRN QERAQLREGR QSDSSASISH FDEMLDDFDS SGKFPGSFDD
GDPQTTNLYV GNLSPQVDEN FLLRTFGRFG PIASVKIMWP RKEEEKRRER NCGFVSFMNR
SNGQAAKDEM QGINVYGYDL KIGWGKSVSL PSQALPVPPP GQMAIRNKEG DTVVLSGSSG
LPVTSVTGQN SELLVTPNVP DIVVVPPNND HLRHIIDTTS LYVLDGGCAF EQVIMERGRG
NQTFSFLFDL GSEEHTYYIW RLYSFAQGDT LKRWRTEPFI MLTGSGRWIP PPLSHVQSPE
HDKQSNATFA AGRSRRVELE CTLTDLQRDE FEDILRGLTL ERSFIKEAMG FALDNADSAG
EIVEVLAESL TLKETLIPTK VARLMLVSDI LHNSSASVRN ASAYRTNFEA ILPDIMESFN
DLYHSITGRI TAEALKERVL KVLQVWADWF LFSDAYVNGL KTTFLRPNNS GVIPFHSLSE
DALDIKTNII VKENSEGAAT KELSSLPLVE LERRCRHNGL SLYGGREMMI ARLLNLMDVE
KVSGLDCDDV KKYAREDTVI VASGSSTGWS DHDEKVLIPN KSSVTTSSSF PDQTEIGPIS
DKTGISESVL SGSKWAHLDD SDDDKKGSRR FGLSYSSSKS RGSRKRHHSR SCSPEKKLSV
SNRKKRTLI
//
