ID A0A0K9XWA6_9FLAO Unreviewed; 522 AA.
AC A0A0K9XWA6;
DT 11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT 11-NOV-2015, sequence version 1.
DT 24-JAN-2024, entry version 32.
DE RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN ORFNames=AC804_16615 {ECO:0000313|EMBL:KNB60782.1};
OS Chryseobacterium sp. Hurlbut01.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae;
OC Chryseobacterium group; Chryseobacterium.
OX NCBI_TaxID=1681828 {ECO:0000313|EMBL:KNB60782.1, ECO:0000313|Proteomes:UP000036769};
RN [1] {ECO:0000313|Proteomes:UP000036769}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Hurlbut01 {ECO:0000313|Proteomes:UP000036769};
RA Couger M.B., Youseff N., Elshahed M., French D., Hoff W.;
RT "Draft Genome Sequence of the Environmental Isolate Chryseobacterium sp.
RT Hurlbut 01.";
RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC Rule:MF_00335}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KNB60782.1}.
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DR EMBL; LGIP01000023; KNB60782.1; -; Genomic_DNA.
DR RefSeq; WP_050380850.1; NZ_LGIP01000023.1.
DR AlphaFoldDB; A0A0K9XWA6; -.
DR PATRIC; fig|1681828.3.peg.2523; -.
DR Proteomes; UP000036769; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR CDD; cd22431; KH-I_RNaseY; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR InterPro; IPR022711; RNase_Y_N.
DR NCBIfam; TIGR00277; HDIG; 1.
DR NCBIfam; TIGR03319; RNase_Y; 1.
DR PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF12072; RNase_Y_N; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR PROSITE; PS51831; HD; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 3: Inferred from homology;
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00335};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_00335}.
FT DOMAIN 338..431
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
FT REGION 85..104
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 522 AA; 58145 MW; 685593655671F46E CRC64;
MTTAIIVGVI CLVIGAVLGM VFSKSSLNAK GKFIIDDATK NAENLIEKAT VQAESIKKEK
NLQAKEKFLE LKSQHDADIQ AREKKMQEAE KRTKDKENKL NDELSKAGKL EKDLDRQIAD
YARKTEILEK KQQELDSATA KKVEMLEKIS NYTAEEAKAE LVETMKAEAK TRAQAHVQSI
MEEAQLNAKS EARKIVIQTI QRIGTEQAIE NSVSVFNIES DEVKGRIIGR EGRNIRALEA
MTGVEIIVDD TPEAILLSCF DPVRREIARL SLHRLVTDGR IHPARIEEVV EKTRKMIEEE
IIEVGKRTII DLGIHGLHPE LVKIVGRMKY RSSYGQNLLQ HSREVANIAA TMAAELGLNV
KMAKRAGLLH DIGKVPEQES ELPHALLGMQ WAEKYGENPE VINAIGAHHD EVEMTSLLSP
IIQVADAISG ARPGARRQVL ESYIQRLKDL EAAALSFEGV SSAYAIQAGR ELRVMVESGK
VNDEIASQLS YDISEKIQNE LTYPGQVRVT VIRETRAVNI AR
//
