ID A0A0L9V6S4_PHAAN Unreviewed; 951 AA.
AC A0A0L9V6S4;
DT 11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT 11-NOV-2015, sequence version 1.
DT 24-JAN-2024, entry version 28.
DE RecName: Full=HRDC domain-containing protein {ECO:0000259|PROSITE:PS50967};
GN ORFNames=LR48_Vigan08g120100 {ECO:0000313|EMBL:KOM50374.1};
OS Phaseolus angularis (Azuki bean) (Vigna angularis).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna.
OX NCBI_TaxID=3914 {ECO:0000313|EMBL:KOM50374.1, ECO:0000313|Proteomes:UP000053144};
RN [1] {ECO:0000313|Proteomes:UP000053144}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Jingnong 6 {ECO:0000313|Proteomes:UP000053144};
RX PubMed=26460024; DOI=10.1073/pnas.1420949112;
RA Yang K., Tian Z., Chen C., Luo L., Zhao B., Wang Z., Yu L., Li Y., Sun Y.,
RA Li W., Chen Y., Li Y., Zhang Y., Ai D., Zhao J., Shang C., Ma Y., Wu B.,
RA Wang M., Gao L., Sun D., Zhang P., Guo F., Wang W., Li Y., Wang J.,
RA Varshney R.K., Wang J., Ling H.Q., Wan P.;
RT "Genome sequencing of adzuki bean (Vigna angularis) provides insight into
RT high starch and low fat accumulation and domestication.";
RL Proc. Natl. Acad. Sci. U.S.A. 112:13213-13218(2015).
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DR EMBL; CM003378; KOM50374.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0L9V6S4; -.
DR STRING; 3914.A0A0L9V6S4; -.
DR EnsemblPlants; KOM50374; KOM50374; LR48_Vigan08g120100.
DR Gramene; KOM50374; KOM50374; LR48_Vigan08g120100.
DR OMA; CSAILET; -.
DR Proteomes; UP000053144; Chromosome 8.
DR GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IEA:InterPro.
DR Gene3D; 1.10.150.80; HRDC domain; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR045092; Rrp6-like.
DR PANTHER; PTHR12124; POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; 1.
DR PANTHER; PTHR12124:SF68; PROTEIN RRP6-LIKE 3; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF00570; HRDC; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000053144}.
FT DOMAIN 335..415
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
SQ SEQUENCE 951 AA; 108231 MW; C8E7C8904DF5383B CRC64;
MNNRMRVTFT VATVAIAATI ISVFLAARRR KKHDSSSSCY LHSEQKPQSA FKRVLSDNSY
TQFKHLNRDE NASNSHPFEA EITALLKTPP PEIEFGTVDL EMKDSYVWVH TETQLKELVD
ALSEERFFAV DTEQHSLRSF LGFTALVQIS TVEKDYLVDT IALHDFMGIL RPVLANPSIC
KVFHGADNDI VWLQRDFHIY VVNLFDTSKA CELLSKPQKS LAYLLETYCG VTTNKLLQRE
DWRQRPLSAE MVHYARTDAH FLLYIANCLI NELKQLDNEN SCSSDKFHFV LEASRRSNMI
CLQLFTKEIE AYPGESSALS LFSRQVCSHG STSISNETQN IVRQLCAWRD LMARIHDESL
KYVLSDQAIV ALASQPSASH SEIHKIIAQA DINMEMGVNS FIISSSPVVC SHLSDIYHML
ANKLVNDDDD IYSVILQKCI GQNGSCPLSI FNYALLINSN LRPNLAHKQL GLKSSKQYSR
KASRDLFVQK FSCKSPVYHN CRIFANDGRL LCYCDEKKLK WYLSRDLAKL VDEDPPAIML
LFEPKGRPED EDNDFYIQSK KNICVGCGEG NHYLRYRIIP SCYRIHFPEH LKSHRSHDIV
LLCVDCHEVA HAAAEKYKRK IAAEFGIPLY LRRVVHPGQK TEKQIEESGV SPLQLRTAAM
ALLRHGPRMP PNRREELTEI IKRYYGGRDI SDEDLERALQ VGMTPHERRR FEKKRGFFFK
HSTGSTATVP EQNNHIGCSP RMSNVDDLKT EAHDGSYANE VDTELFMRKD DFRNSTSASD
VTVNGPDSAA LNEDEITVAT ADCNEGGDSA AVNVDNSCLN RTQTNGLGDL SCSPNDEKSI
HTEHNSKLSL LGHGPHGKQV VEHLLREYGE DGIREFCQRW RQVFVDAVKP RFLPGGWDVK
HRYAMIIRSS IFLITSYHPY AGHLCSMNIY VIYSIYLLRH IDMESVLQEH K
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