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Database: UniProt
Entry: A0A0M0BR17_9ARCH
LinkDB: A0A0M0BR17_9ARCH
Original site: A0A0M0BR17_9ARCH 
ID   A0A0M0BR17_9ARCH        Unreviewed;       791 AA.
AC   A0A0M0BR17;
DT   11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT   11-NOV-2015, sequence version 1.
DT   24-JAN-2024, entry version 23.
DE   RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE            EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
DE   Flags: Fragment;
GN   ORFNames=AC477_04500 {ECO:0000313|EMBL:KON31008.1};
OS   miscellaneous Crenarchaeota group-1 archaeon SG8-32-1.
OC   Archaea; Candidatus Bathyarchaeota; MCG-1.
OX   NCBI_TaxID=1685124 {ECO:0000313|EMBL:KON31008.1, ECO:0000313|Proteomes:UP000037237};
RN   [1] {ECO:0000313|EMBL:KON31008.1, ECO:0000313|Proteomes:UP000037237}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SG8-32-1 {ECO:0000313|EMBL:KON31008.1};
RA   Lazar C.S., Baker B.J., Seitz K.W., Hyde A.S., Dick G.J., Hinrichs K.-U.,
RA   Teske A.P.;
RT   "New insights into the roles of widespread benthic archaea in carbon and
RT   nitrogen cycling.";
RL   Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC       DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC       {ECO:0000256|RuleBase:RU004279}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC         ECO:0000256|RuleBase:RU004279};
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC       {ECO:0000256|RuleBase:RU004279}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KON31008.1}.
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DR   EMBL; LFWU01000109; KON31008.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0M0BR17; -.
DR   Proteomes; UP000037237; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR   Gene3D; 1.10.132.30; -; 1.
DR   Gene3D; 2.40.40.20; -; 1.
DR   Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR   Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR   Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR   InterPro; IPR017896; 4Fe4S_Fe-S-bd.
DR   InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR   InterPro; IPR000722; RNA_pol_asu.
DR   InterPro; IPR006592; RNA_pol_N.
DR   InterPro; IPR007080; RNA_pol_Rpb1_1.
DR   InterPro; IPR007066; RNA_pol_Rpb1_3.
DR   InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR   InterPro; IPR007083; RNA_pol_Rpb1_4.
DR   InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR   InterPro; IPR038120; Rpb1_funnel_sf.
DR   InterPro; IPR012758; RPO1N.
DR   NCBIfam; TIGR02390; RNA_pol_rpoA1; 1.
DR   PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR   PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR   Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR   Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR   Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR   Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR   SMART; SM00663; RPOLA_N; 1.
DR   SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
DR   PROSITE; PS51379; 4FE4S_FER_2; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000256|RuleBase:RU004279};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW   ECO:0000256|RuleBase:RU004279};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|RuleBase:RU004279};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279}.
FT   DOMAIN          562..592
FT                   /note="4Fe-4S ferredoxin-type"
FT                   /evidence="ECO:0000259|PROSITE:PS51379"
FT   NON_TER         791
FT                   /evidence="ECO:0000313|EMBL:KON31008.1"
SQ   SEQUENCE   791 AA;  89421 MW;  05F8559ECE15E861 CRC64;
     MEDSIHKIID EIYFGIFSPQ DIRRQSVAEI QTADTYDEDG APITSGLMDG RLGTLEPRQR
     CKTCGNTAIR CPGHFGHIEL AVPIIHIEFT KIIHDLLQST CRNCGRILLP ESRVAKIKEL
     IKRTLNLIGE VPNTVYKKIV KEAKKKDCPY CGALQSKIEF AKPTTFYEIL EEGAQRLTQS
     MVRERLERIP DEDLELFGFS PATARPEWMV LQVLPVPPVY VRPSITLESG IRSEDDLTHK
     LVDIIRINQR LRENMAAGAP TLIIQDLSEL LQYHATTYFN NEASGIPPAR HRSGRALKTI
     SQRLKGKEGR FRSNLSGKRV DFSARTVISP DPNLDLNEVG VPQDIAMRLS MPEKVTVWNI
     EDMRKLIING PENFPGALYV VRPDGKRIRL EFVVERDKVA ESLETGFIVE RHLMNGDVAI
     FNRQPSLHRM SIMAHYVRVL PHKTFRLHLC VCPPYNADFD GDEMNLHVPQ GEEAQTEARL
     LMQVQDQILS PRFGGPIIGA IRDFITASYL LTKKSNSLTK EEVCRLLVAS KFEDNLPEPY
     ITEPQPLWTG KQIFSLFLPK DLNYVLKSTI CRNCATCLGE SCPHDSYVVV KDGVLKCGII
     DRRSIGAEQS ESILHRIIKD YGSEAGRKFL NNICQLLKVF VSMRGFTFSY DELELSEVAQ
     KKIRRNMNVI EKRIEKLIVD YRDGTLPRLP GQTLNESFEI YVMNELAEAR DKAGKVADED
     FELENSGIIM TRTGARGSNL NIGQMAASVG QQSVRGKRVM RGYVNRALTH FKEGDPTPKA
     RGFVYASYTT G
//
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