ID A0A0M5IWU1_SPHS1 Unreviewed; 409 AA.
AC A0A0M5IWU1;
DT 09-DEC-2015, integrated into UniProtKB/TrEMBL.
DT 09-DEC-2015, sequence version 1.
DT 27-MAR-2024, entry version 30.
DE SubName: Full=Diaminopimelate decarboxylase {ECO:0000313|EMBL:ALC11556.1};
GN ORFNames=LH20_06275 {ECO:0000313|EMBL:ALC11556.1};
OS Sphingopyxis sp. (strain 113P3).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Sphingopyxis.
OX NCBI_TaxID=292913 {ECO:0000313|EMBL:ALC11556.1, ECO:0000313|Proteomes:UP000061305};
RN [1] {ECO:0000313|EMBL:ALC11556.1, ECO:0000313|Proteomes:UP000061305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=113P3 {ECO:0000313|EMBL:ALC11556.1,
RC ECO:0000313|Proteomes:UP000061305};
RX PubMed=26472829;
RA Ohtsubo Y., Nagata Y., Numata M., Tsuchikane K., Hosoyama A., Yamazoe A.,
RA Tsuda M., Fujita N., Kawai F.;
RT "Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain
RT Sphingopyxis sp. 113P3 (NBRC 111507).";
RL Genome Announc. 3:e01169-15(2015).
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933,
CC ECO:0000256|PIRSR:PIRSR600183-50};
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-II family.
CC {ECO:0000256|RuleBase:RU003737}.
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DR EMBL; CP009452; ALC11556.1; -; Genomic_DNA.
DR RefSeq; WP_053553455.1; NZ_CP009452.1.
DR AlphaFoldDB; A0A0M5IWU1; -.
DR STRING; 292913.LH20_06275; -.
DR KEGG; sphp:LH20_06275; -.
DR PATRIC; fig|292913.6.peg.1277; -.
DR OrthoDB; 9802241at2; -.
DR Proteomes; UP000061305; Chromosome.
DR GO; GO:0016830; F:carbon-carbon lyase activity; IEA:UniProt.
DR CDD; cd06839; PLPDE_III_Btrk_like; 1.
DR Gene3D; 3.20.20.10; Alanine racemase; 1.
DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C.
DR InterPro; IPR017530; DCO2ase_PEP1.
DR InterPro; IPR022643; De-COase2_C.
DR InterPro; IPR022657; De-COase2_CS.
DR InterPro; IPR022644; De-COase2_N.
DR InterPro; IPR000183; Orn/DAP/Arg_de-COase.
DR InterPro; IPR029066; PLP-binding_barrel.
DR NCBIfam; TIGR03099; dCO2ase_PEP1; 1.
DR PANTHER; PTHR43727; DIAMINOPIMELATE DECARBOXYLASE; 1.
DR PANTHER; PTHR43727:SF2; DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED; 1.
DR Pfam; PF02784; Orn_Arg_deC_N; 1.
DR Pfam; PF00278; Orn_DAP_Arg_deC; 1.
DR PRINTS; PR01179; ODADCRBXLASE.
DR SUPFAM; SSF50621; Alanine racemase C-terminal domain-like; 1.
DR SUPFAM; SSF51419; PLP-binding barrel; 1.
DR PROSITE; PS00879; ODR_DC_2_2; 1.
PE 3: Inferred from homology;
KW Pyridoxal phosphate {ECO:0000256|PIRSR:PIRSR600183-50};
KW Reference proteome {ECO:0000313|Proteomes:UP000061305}.
FT DOMAIN 46..292
FT /note="Orn/DAP/Arg decarboxylase 2 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF02784"
FT DOMAIN 293..387
FT /note="Orn/DAP/Arg decarboxylase 2 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF00278"
FT ACT_SITE 360
FT /note="Proton donor"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
FT MOD_RES 68
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
SQ SEQUENCE 409 AA; 41901 MW; 8705266459E41E96 CRC64;
MKPHGPIPPG YSADADGMLI VGGERADALA ARAGDTPLFV YDSALLKARV AEWRAAMPSE
VQLHYAMKAN PFAPLLTFMA GIVDGFDVAS GGELAAALAS GMEAEHISFA GPGKRDRELE
AAIKAGATIN LESAGEAERA LHIAARLGAR PRLAVRVNPD FDLKGSGMKM GGGAKPFGVD
AEDVPALVRR LVDAGADWQG FHIFAGSQAL SAAAIAETQA QTVALAARLA NGIGAAPPLV
NLGGGMGVPY FPGDSAVDTA AVGAALAETL AARDPVLGAS RFAMELGRWL VAEAGVYITR
IVDRKVSHGE IFLVTDGGLH HQLAASGNFG TVIRRNYPIA IASHFGAEAV ETVSVVGCLC
TPLDRLGDQV ALPRAEAGDL VAIFQAGAYG ASASPAAFLG QGPAREILV
//
