ID A0A0M9EE66_9RHOB Unreviewed; 236 AA.
AC A0A0M9EE66;
DT 09-DEC-2015, integrated into UniProtKB/TrEMBL.
DT 09-DEC-2015, sequence version 1.
DT 27-MAR-2024, entry version 30.
DE SubName: Full=Putative HTH-type transcriptional regulator YdfH {ECO:0000313|EMBL:KPA19955.1};
GN Name=ydfH_8 {ECO:0000313|EMBL:KPA19955.1};
GN ORFNames=shim_39140 {ECO:0000313|EMBL:KPA19955.1};
OS Shimia sp. SK013.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae.
OX NCBI_TaxID=1389006 {ECO:0000313|EMBL:KPA19955.1, ECO:0000313|Proteomes:UP000037951};
RN [1] {ECO:0000313|EMBL:KPA19955.1, ECO:0000313|Proteomes:UP000037951}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SK013 {ECO:0000313|EMBL:KPA19955.1,
RC ECO:0000313|Proteomes:UP000037951};
RA Voget S., Kanukollu S., Daniel R., Engelen B.;
RT "Genome Sequence of Shimia sp. SK013.";
RL Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KPA19955.1}.
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DR EMBL; LAJH01000028; KPA19955.1; -; Genomic_DNA.
DR RefSeq; WP_054004320.1; NZ_LAJH01000028.1.
DR AlphaFoldDB; A0A0M9EE66; -.
DR STRING; 1389006.shim_39140; -.
DR PATRIC; fig|1389006.3.peg.4041; -.
DR OrthoDB; 8638122at2; -.
DR Proteomes; UP000037951; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd07377; WHTH_GntR; 1.
DR Gene3D; 1.20.120.530; GntR ligand-binding domain-like; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR011711; GntR_C.
DR InterPro; IPR008920; TF_FadR/GntR_C.
DR InterPro; IPR000524; Tscrpt_reg_HTH_GntR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR43537; TRANSCRIPTIONAL REGULATOR, GNTR FAMILY; 1.
DR PANTHER; PTHR43537:SF52; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF07729; FCD; 1.
DR Pfam; PF00392; GntR; 1.
DR SMART; SM00895; FCD; 1.
DR SMART; SM00345; HTH_GNTR; 1.
DR SUPFAM; SSF48008; GntR ligand-binding domain-like; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50949; HTH_GNTR; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000037951};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 6..73
FT /note="HTH gntR-type"
FT /evidence="ECO:0000259|PROSITE:PS50949"
SQ SEQUENCE 236 AA; 25876 MW; 7F81BCC6745A5F66 CRC64;
MSADPKTRKE ALYESVKAAV LTLELPPGSD LDETALSEEF SLSRTPLREV FRNLAGEGYL
DLRENRGARV SEMSHKTLRD FFLAAPMIYG AVMRLAAVNR TAAQIDALQA AQDGFRAALR
SGSGKDRALA NNRFHEVTGE MADNIYLLPS FQRLLIDHAR ISMTFYRPLG DDMARNVSEA
AAQHDDVIAA IQARDEAACG QLAIDHWNLS RGQIELFVMP AGLDMPLGAL PSSRTA
//