ID A0A0Q9CWJ5_9CELL Unreviewed; 1070 AA.
AC A0A0Q9CWJ5;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 44.
DE RecName: Full=RNA polymerase sigma-70 region 2 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=ASE27_01205 {ECO:0000313|EMBL:KRD47063.1};
OS Oerskovia sp. Root918.
OC Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Cellulomonadaceae;
OC Oerskovia.
OX NCBI_TaxID=1736607 {ECO:0000313|EMBL:KRD47063.1, ECO:0000313|Proteomes:UP000051694};
RN [1] {ECO:0000313|EMBL:KRD47063.1, ECO:0000313|Proteomes:UP000051694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Root918 {ECO:0000313|EMBL:KRD47063.1,
RC ECO:0000313|Proteomes:UP000051694};
RA Gilbert D.G.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:KRD47063.1, ECO:0000313|Proteomes:UP000051694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Root918 {ECO:0000313|EMBL:KRD47063.1,
RC ECO:0000313|Proteomes:UP000051694};
RA Schulze-Lefert P.;
RT "Functional overlap of the Arabidopsis leaf and root microbiotas.";
RL Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRD47063.1}.
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DR EMBL; LMJG01000001; KRD47063.1; -; Genomic_DNA.
DR RefSeq; WP_056644896.1; NZ_LMJG01000001.1.
DR AlphaFoldDB; A0A0Q9CWJ5; -.
DR Proteomes; UP000051694; Unassembled WGS sequence.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:UniProt.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.1320; Anti-sigma factor, zinc-finger domain; 1.
DR Gene3D; 2.60.40.10; Immunoglobulins; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR041916; Anti_sigma_zinc_sf.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR001434; OmcB-like_DUF11.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR027383; Znf_put.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR43133:SF58; BLL3014 PROTEIN; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR Pfam; PF01345; DUF11; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF13490; zf-HC2; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000051694};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 33..98
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 201..235
FT /note="Putative zinc-finger"
FT /evidence="ECO:0000259|Pfam:PF13490"
FT DOMAIN 549..639
FT /note="DUF11"
FT /evidence="ECO:0000259|Pfam:PF01345"
FT REGION 399..530
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 399..420
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 421..435
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 496..525
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1070 AA; 105356 MW; 4D35E12ED9B73F5C CRC64;
MTQVETYADG ASTSDAELIT AVRGGDHSAF GALYERHAAA ARTVARQYVH STSDADDVVS
EAFAKVLGIL QTGGGPDVTF RAYLFTVVRR LSYDLVNGVR RTQPTDDVET FETAFGPMAS
TEDPTLQGFE RSIVTKAYQG LPERWQAVLW YTEVEEMNPA QIAPLLGLSA NGVSALAYRA
REGLRQAYLQ QHLTGAASEG CEVVNPLLGS YVRGGLAKRE NAKVDAHLEG CGECRGLVLE
LGDVSHGMRA VIAPLVFGVA GLGLVGHALP IVGGGAVAGG AGAGTGASAS ASGTTAGTSG
GAAAGGSSAV GAGGGAAATA GAAGGTTAAG AGAGGAVGAA AAAGATGAVA AGSGAAVAGA
TGIAAFIAAS PLVAAAVGVV AIAAVGVGVV AVNGGFSSDT PPSAGASPDP SQSPTDTPTG
SPTTAPTPPS ADPTSPANLA PLEEDGTGST PLTAGGNTGG GAGGTGAGTG GDAGGGTGTA
GDQAGPGTTV PATPLTPVDP VDPVDPVDPV DPVDPVDPVD PVDPVDPAPA TLDLAFAPLQ
LAPRDPEDLT LTASNTGGTS AEEVVVDVTL PANVSVVSST VIAGRGVVPA LKAAALPCGT
AVPQGDGTSL VTCTVGVLAP GENKELVVTV QASRGGTYSF GGTVHGKGLV PVKKTYAPAP
VQSYGAEVDL ATPVVGELLN PGASAVRLSA RNTGDVDAQG LTFSVGNLPS GSSARALTPG
WFCEPDGSSA RCSVTGAGGL PAPDASASAG PAVVLDVQLV ADGGAPASTT GLTFAASASS
DGKSVQDSAS ATLRVDSPWA GAEDAIPSGT RAVPQCVGVD ASTASIALAG VTNTTAYDDL
RVRLDAVGST SPVVGLTRGE TADLRLDDGY RFPEGKATLT LATTVAGAEY TRPVEAGAFE
ALDCYRVPDG DWLAAATVTA ENVGGTVRLV GSATNTSTTP MDVRMLAPEG LGDVADSKVV
TLAPGATGTF VIDTGRAAVE AGKVAFHQAR WVEDIGPGED GPPSDGKEYT HTTTAAFEGA
VIAPKVVQPV VGECRFDVAS RTSVFARRFR WCSGSWGMRG CARRWVRARR
//
