ID A0A0Q9SSF6_9ACTN Unreviewed; 662 AA.
AC A0A0Q9SSF6;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 41.
DE RecName: Full=RNA polymerase sigma-70 region 2 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=ASG94_20275 {ECO:0000313|EMBL:KRF30343.1};
OS Nocardioides sp. Soil805.
OC Bacteria; Actinomycetota; Actinomycetes; Propionibacteriales;
OC Nocardioidaceae; Nocardioides.
OX NCBI_TaxID=1736416 {ECO:0000313|EMBL:KRF30343.1, ECO:0000313|Proteomes:UP000051356};
RN [1] {ECO:0000313|EMBL:KRF30343.1, ECO:0000313|Proteomes:UP000051356}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Soil805 {ECO:0000313|EMBL:KRF30343.1,
RC ECO:0000313|Proteomes:UP000051356};
RA Gilbert D.G.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:KRF30343.1, ECO:0000313|Proteomes:UP000051356}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Soil805 {ECO:0000313|EMBL:KRF30343.1,
RC ECO:0000313|Proteomes:UP000051356};
RA Schulze-Lefert P.;
RT "Functional overlap of the Arabidopsis leaf and root microbiotas.";
RL Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRF30343.1}.
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DR EMBL; LMSU01000006; KRF30343.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0Q9SSF6; -.
DR STRING; 1736416.ASG94_20275; -.
DR Proteomes; UP000051356; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR027383; Znf_put.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR PANTHER; PTHR43133:SF8; RNA POLYMERASE SIGMA FACTOR FECI-RELATED; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF13490; zf-HC2; 1.
DR PRINTS; PR01217; PRICHEXTENSN.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 24..91
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 187..221
FT /note="Putative zinc-finger"
FT /evidence="ECO:0000259|Pfam:PF13490"
FT REGION 328..557
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 641..662
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 345..362
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 383..402
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 417..439
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 440..457
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 458..472
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 473..550
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 662 AA; 66886 MW; C9299DF193B396FE CRC64;
METPGDAELI SAVRGGDTDA YGQLFERHVE AARRLARQLV SAGDVEDLVS EAFVKVLQVL
QRGGGPDVAF RAYLLTAVRR LRVDRLRATS RLHTTDDMEM FDPGVPFRDT AVEGFESATA
ARAFASLPER WQLVLWHTEV EGQKPADVAP LLGMSANSVS ALAYRAREGL RQAYLNEHAS
ELDDESCQWT RAHLGAYIRN GISRRDAGKL EDHLGHCRSC AAIYLELSEV NSNLGAILAP
LLLGGVGAAY ASAATGAAAP AGLAGLVGRA RDLIGAHSQV AAVVGVTAAV SVGGGGFLVW
QDTQPPAAVS GAVAGTDQTD GEAALDDAAS AAAGSGALSG GRGQAQGRTA GTTAGTSATP
GPTSPVPSSP ASGPASGPAS EPGDVPSTET TDGTSDGPTD SPTDAPTEPP SDDPTQGPTD
DPTQGPTTQG PTQGPTDGPT QGPTAPPTTP PTSAPTSAPT AAPTVAPTGV PTTLPTLTPP
PVPLPTVDPP TTAPTTAPTT PPTTDPTTPP TTDPTTPPTT PPTTDPTTPP TTDPTTPPTS
PPTTDPTPDP DPDPAVRDLV MSVTQPTGNG ASVDLTATVV GLPEGETATL VLTGDPVLVQ
VEGAQCGSWA GGRMTCTVTD SSPLAVHAVS GANRTSRLTF TATSDDGPDT TPEDNTATVT
WD
//