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Database: UniProt
Entry: A0A0Q9SSF6_9ACTN
LinkDB: A0A0Q9SSF6_9ACTN
Original site: A0A0Q9SSF6_9ACTN 
ID   A0A0Q9SSF6_9ACTN        Unreviewed;       662 AA.
AC   A0A0Q9SSF6;
DT   20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT   20-JAN-2016, sequence version 1.
DT   24-JAN-2024, entry version 41.
DE   RecName: Full=RNA polymerase sigma-70 region 2 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=ASG94_20275 {ECO:0000313|EMBL:KRF30343.1};
OS   Nocardioides sp. Soil805.
OC   Bacteria; Actinomycetota; Actinomycetes; Propionibacteriales;
OC   Nocardioidaceae; Nocardioides.
OX   NCBI_TaxID=1736416 {ECO:0000313|EMBL:KRF30343.1, ECO:0000313|Proteomes:UP000051356};
RN   [1] {ECO:0000313|EMBL:KRF30343.1, ECO:0000313|Proteomes:UP000051356}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Soil805 {ECO:0000313|EMBL:KRF30343.1,
RC   ECO:0000313|Proteomes:UP000051356};
RA   Gilbert D.G.;
RL   Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:KRF30343.1, ECO:0000313|Proteomes:UP000051356}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Soil805 {ECO:0000313|EMBL:KRF30343.1,
RC   ECO:0000313|Proteomes:UP000051356};
RA   Schulze-Lefert P.;
RT   "Functional overlap of the Arabidopsis leaf and root microbiotas.";
RL   Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|ARBA:ARBA00010641}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KRF30343.1}.
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DR   EMBL; LMSU01000006; KRF30343.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0Q9SSF6; -.
DR   STRING; 1736416.ASG94_20275; -.
DR   Proteomes; UP000051356; Unassembled WGS sequence.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 1.10.1740.10; -; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR   InterPro; IPR039425; RNA_pol_sigma-70-like.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR027383; Znf_put.
DR   NCBIfam; TIGR02937; sigma70-ECF; 1.
DR   PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR   PANTHER; PTHR43133:SF8; RNA POLYMERASE SIGMA FACTOR FECI-RELATED; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF13490; zf-HC2; 1.
DR   PRINTS; PR01217; PRICHEXTENSN.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR   SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE   3: Inferred from homology;
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          24..91
FT                   /note="RNA polymerase sigma-70 region 2"
FT                   /evidence="ECO:0000259|Pfam:PF04542"
FT   DOMAIN          187..221
FT                   /note="Putative zinc-finger"
FT                   /evidence="ECO:0000259|Pfam:PF13490"
FT   REGION          328..557
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          641..662
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        345..362
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        383..402
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        417..439
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        440..457
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        458..472
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        473..550
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   662 AA;  66886 MW;  C9299DF193B396FE CRC64;
     METPGDAELI SAVRGGDTDA YGQLFERHVE AARRLARQLV SAGDVEDLVS EAFVKVLQVL
     QRGGGPDVAF RAYLLTAVRR LRVDRLRATS RLHTTDDMEM FDPGVPFRDT AVEGFESATA
     ARAFASLPER WQLVLWHTEV EGQKPADVAP LLGMSANSVS ALAYRAREGL RQAYLNEHAS
     ELDDESCQWT RAHLGAYIRN GISRRDAGKL EDHLGHCRSC AAIYLELSEV NSNLGAILAP
     LLLGGVGAAY ASAATGAAAP AGLAGLVGRA RDLIGAHSQV AAVVGVTAAV SVGGGGFLVW
     QDTQPPAAVS GAVAGTDQTD GEAALDDAAS AAAGSGALSG GRGQAQGRTA GTTAGTSATP
     GPTSPVPSSP ASGPASGPAS EPGDVPSTET TDGTSDGPTD SPTDAPTEPP SDDPTQGPTD
     DPTQGPTTQG PTQGPTDGPT QGPTAPPTTP PTSAPTSAPT AAPTVAPTGV PTTLPTLTPP
     PVPLPTVDPP TTAPTTAPTT PPTTDPTTPP TTDPTTPPTT PPTTDPTTPP TTDPTTPPTS
     PPTTDPTPDP DPDPAVRDLV MSVTQPTGNG ASVDLTATVV GLPEGETATL VLTGDPVLVQ
     VEGAQCGSWA GGRMTCTVTD SSPLAVHAVS GANRTSRLTF TATSDDGPDT TPEDNTATVT
     WD
//
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