ID A0A0R0I5R9_SOYBN Unreviewed; 442 AA.
AC A0A0R0I5R9;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 44.
DE SubName: Full=Methionine gamma lyase 1 {ECO:0000313|EMBL:QHT53621.1};
DE EC=4.4.1.11 {ECO:0000313|EMBL:QHT53621.1};
GN Name=100808736 {ECO:0000313|EnsemblPlants:KRH34255};
GN ORFNames=GLYMA_10G172700 {ECO:0000313|EMBL:KRH34255.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH34255.1};
RN [1] {ECO:0000313|EMBL:KRH34255.1, ECO:0000313|EnsemblPlants:KRH34255}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH34255};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH34255.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH34255}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH34255};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH34255.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH34255.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:QHT53621.1}
RP NUCLEOTIDE SEQUENCE.
RA Teshima T., Yamada N., Yokota Y., Sayama T., Ishimoto M., Inagaki K.,
RA Koeduka T., Matsui K.;
RL Submitted (MAY-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933,
CC ECO:0000256|RuleBase:RU362118};
CC -!- SIMILARITY: Belongs to the trans-sulfuration enzymes family.
CC {ECO:0000256|RuleBase:RU362118}.
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DR EMBL; CM000843; KRH34255.1; -; Genomic_DNA.
DR EMBL; MK887190; QHT53621.1; -; Genomic_DNA.
DR RefSeq; XP_003536171.1; XM_003536123.3.
DR AlphaFoldDB; A0A0R0I5R9; -.
DR SMR; A0A0R0I5R9; -.
DR STRING; 3847.A0A0R0I5R9; -.
DR PaxDb; 3847-GLYMA10G31590-1; -.
DR EnsemblPlants; KRH34255; KRH34255; GLYMA_10G172700.
DR GeneID; 100808736; -.
DR Gramene; KRH34255; KRH34255; GLYMA_10G172700.
DR KEGG; gmx:100808736; -.
DR eggNOG; KOG0053; Eukaryota.
DR InParanoid; A0A0R0I5R9; -.
DR OMA; YMDGHGA; -.
DR OrthoDB; 2454808at2759; -.
DR Proteomes; UP000008827; Chromosome 10.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0016846; F:carbon-sulfur lyase activity; IBA:GO_Central.
DR GO; GO:0018826; F:methionine gamma-lyase activity; IEA:UniProtKB-EC.
DR GO; GO:0030170; F:pyridoxal phosphate binding; IBA:GO_Central.
DR GO; GO:0019346; P:transsulfuration; IBA:GO_Central.
DR Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 1.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR InterPro; IPR000277; Cys/Met-Metab_PyrdxlP-dep_enz.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR PANTHER; PTHR11808:SF80; GAMMA-CYSTATHIONASE; 1.
DR PANTHER; PTHR11808; TRANS-SULFURATION ENZYME FAMILY MEMBER; 1.
DR Pfam; PF01053; Cys_Met_Meta_PP; 1.
DR PIRSF; PIRSF001434; CGS; 1.
DR SUPFAM; SSF53383; PLP-dependent transferases; 1.
PE 3: Inferred from homology;
KW Lyase {ECO:0000313|EMBL:QHT53621.1};
KW Pyridoxal phosphate {ECO:0000256|ARBA:ARBA00022898,
KW ECO:0000256|PIRSR:PIRSR001434-2};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT MOD_RES 240
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR001434-2"
SQ SEQUENCE 442 AA; 48069 MW; 14CA5EFEC9151E61 CRC64;
MGDTYVLATP KRNRSDDVDG GEAKKLLLQQ GEADPAAALA SARHEFGEHG GVNMSIEASA
TFTVMEPETM RRMFAGELGP DRDFFIYSRH FNPTVLSLSR LMAALEGTEA AYCTASGMSA
ISAVLLQLCS HGEHVVASRT LYGGTHALLS HFLPRTCGIS TSFVEVTDLD MVDAAIVEGK
TKVLYFESVS NPTLTVANIP ELCHMAHRKG VTVVVDNTFA PMVLSPARLG ADVVVHSISK
FISGGADIIA GAVCGPARLV NAMMDLQQGS LMLLGPTMNA KVAFELSERI PHLGLRMKEH
SNRALEFATR LKRLGMRVIY PGLEEHPQHQ LLKSMHNKDY GYGGLMCVDM ETEERANRFM
SHLQNYGQFG FMAVSLGYYE TLMSCSGSST SSELSTEEKE LAGISPGLVR MSIGYIGTLE
QKWSQLQKAL TRLNDSGYNK IA
//