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Database: UniProt
Entry: A0A0R3SJZ5_HYMDI
LinkDB: A0A0R3SJZ5_HYMDI
Original site: A0A0R3SJZ5_HYMDI 
ID   A0A0R3SJZ5_HYMDI        Unreviewed;       635 AA.
AC   A0A0R3SJZ5;
DT   20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT   20-JAN-2016, sequence version 1.
DT   24-JAN-2024, entry version 26.
DE   SubName: Full=Splicing factor 3A subunit 1 {ECO:0000313|WBParaSite:HDID_0000526001-mRNA-1};
GN   ORFNames=HDID_LOCUS5257 {ECO:0000313|EMBL:VDL57575.1};
OS   Hymenolepis diminuta (Rat tapeworm).
OC   Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Platyhelminthes; Cestoda;
OC   Eucestoda; Cyclophyllidea; Hymenolepididae; Hymenolepis.
OX   NCBI_TaxID=6216 {ECO:0000313|Proteomes:UP000046397, ECO:0000313|WBParaSite:HDID_0000526001-mRNA-1};
RN   [1] {ECO:0000313|WBParaSite:HDID_0000526001-mRNA-1}
RP   IDENTIFICATION.
RG   WormBaseParasite;
RL   Submitted (FEB-2017) to UniProtKB.
RN   [2] {ECO:0000313|EMBL:VDL57575.1, ECO:0000313|Proteomes:UP000274504}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RG   Pathogen Informatics;
RL   Submitted (NOV-2018) to the EMBL/GenBank/DDBJ databases.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   EMBL; UYSG01002539; VDL57575.1; -; Genomic_DNA.
DR   STRING; 6216.A0A0R3SJZ5; -.
DR   WBParaSite; HDID_0000526001-mRNA-1; HDID_0000526001-mRNA-1; HDID_0000526001.
DR   Proteomes; UP000046397; Unplaced.
DR   Proteomes; UP000274504; Unassembled WGS sequence.
DR   GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:InterPro.
DR   Gene3D; 1.10.10.790; Surp module; 2.
DR   InterPro; IPR045146; SF3A1.
DR   InterPro; IPR022030; SF3A1_dom.
DR   InterPro; IPR000061; Surp.
DR   InterPro; IPR035967; SWAP/Surp_sf.
DR   PANTHER; PTHR15316; SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED; 1.
DR   PANTHER; PTHR15316:SF1; SPLICING FACTOR 3A SUBUNIT 1; 1.
DR   Pfam; PF12230; PRP21_like_P; 1.
DR   Pfam; PF01805; Surp; 2.
DR   SMART; SM00648; SWAP; 2.
DR   SUPFAM; SSF109905; Surp module (SWAP domain); 2.
DR   PROSITE; PS50128; SURP; 2.
PE   4: Predicted;
KW   mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW   mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000274504};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT   DOMAIN          31..73
FT                   /note="SURP motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50128"
FT   DOMAIN          138..180
FT                   /note="SURP motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50128"
FT   REGION          293..326
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          348..408
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          595..635
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        365..383
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        595..619
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   635 AA;  71684 MW;  4ACB1956525B5729 CRC64;
     MTMTEIVTES SNKPINPKIG IIYPPPEVRN IVDKTASFVA RNGPDFESRI RQNEINNPKF
     NFLNPSDPYH AYYQQKVKDF TDGKATESLG MKVSVPSSAR LAQDAPKIIK ETFIPKDPPP
     EFEFVHDPAS INALDIDVVK LTAQFVSRNG KQFLVNLMNR ETRNYQFDFL RTQHNMFSYF
     TKLVEQYTKV LIPPRDLITS LDEELSNPKT ILDRVKYRVE WHKYQERQRR KEEEAQEKER
     LAYAQIDWHD FVVVETVDFQ PNETGTFPMP ITPEEVGARA IADERGEMLP QQNEISINAP
     PPPGSYDPLP SELNGMEDEE EDLDEEQHIK SITVPAAPAV EQVDVQEDEA GGEDMELSDD
     EDTANHVPPP PPPQQPAKPS RPLPPTADQV LIRHDYDPKA AAAVREAAEA QKNQVLFVSP
     FTGEKIPASQ VPKHMRVGLL DPKWVEQRDR EIREKREQDQ VYASGSVIES NLKQLAQRRS
     DIFGVGAEET AIGKTAEEEK EKESKPEKLI WDGHAASAEA VAKRAKDYIT PEDVRAHFEA
     EQQKELERAK IGVQLPTQQI PQPTFLMTAP PSQSTAQQMQ QAAFLSGMMM PPPTGYPPFM
     HPPPTMMQAP PPAQPPLLPS TTVEEPEAKK SRTTE
//
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