ID A0A0R3SJZ5_HYMDI Unreviewed; 635 AA.
AC A0A0R3SJZ5;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 26.
DE SubName: Full=Splicing factor 3A subunit 1 {ECO:0000313|WBParaSite:HDID_0000526001-mRNA-1};
GN ORFNames=HDID_LOCUS5257 {ECO:0000313|EMBL:VDL57575.1};
OS Hymenolepis diminuta (Rat tapeworm).
OC Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Platyhelminthes; Cestoda;
OC Eucestoda; Cyclophyllidea; Hymenolepididae; Hymenolepis.
OX NCBI_TaxID=6216 {ECO:0000313|Proteomes:UP000046397, ECO:0000313|WBParaSite:HDID_0000526001-mRNA-1};
RN [1] {ECO:0000313|WBParaSite:HDID_0000526001-mRNA-1}
RP IDENTIFICATION.
RG WormBaseParasite;
RL Submitted (FEB-2017) to UniProtKB.
RN [2] {ECO:0000313|EMBL:VDL57575.1, ECO:0000313|Proteomes:UP000274504}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RG Pathogen Informatics;
RL Submitted (NOV-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; UYSG01002539; VDL57575.1; -; Genomic_DNA.
DR STRING; 6216.A0A0R3SJZ5; -.
DR WBParaSite; HDID_0000526001-mRNA-1; HDID_0000526001-mRNA-1; HDID_0000526001.
DR Proteomes; UP000046397; Unplaced.
DR Proteomes; UP000274504; Unassembled WGS sequence.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:InterPro.
DR Gene3D; 1.10.10.790; Surp module; 2.
DR InterPro; IPR045146; SF3A1.
DR InterPro; IPR022030; SF3A1_dom.
DR InterPro; IPR000061; Surp.
DR InterPro; IPR035967; SWAP/Surp_sf.
DR PANTHER; PTHR15316; SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED; 1.
DR PANTHER; PTHR15316:SF1; SPLICING FACTOR 3A SUBUNIT 1; 1.
DR Pfam; PF12230; PRP21_like_P; 1.
DR Pfam; PF01805; Surp; 2.
DR SMART; SM00648; SWAP; 2.
DR SUPFAM; SSF109905; Surp module (SWAP domain); 2.
DR PROSITE; PS50128; SURP; 2.
PE 4: Predicted;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000274504};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT DOMAIN 31..73
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
FT DOMAIN 138..180
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
FT REGION 293..326
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 348..408
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 595..635
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 365..383
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 595..619
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 635 AA; 71684 MW; 4ACB1956525B5729 CRC64;
MTMTEIVTES SNKPINPKIG IIYPPPEVRN IVDKTASFVA RNGPDFESRI RQNEINNPKF
NFLNPSDPYH AYYQQKVKDF TDGKATESLG MKVSVPSSAR LAQDAPKIIK ETFIPKDPPP
EFEFVHDPAS INALDIDVVK LTAQFVSRNG KQFLVNLMNR ETRNYQFDFL RTQHNMFSYF
TKLVEQYTKV LIPPRDLITS LDEELSNPKT ILDRVKYRVE WHKYQERQRR KEEEAQEKER
LAYAQIDWHD FVVVETVDFQ PNETGTFPMP ITPEEVGARA IADERGEMLP QQNEISINAP
PPPGSYDPLP SELNGMEDEE EDLDEEQHIK SITVPAAPAV EQVDVQEDEA GGEDMELSDD
EDTANHVPPP PPPQQPAKPS RPLPPTADQV LIRHDYDPKA AAAVREAAEA QKNQVLFVSP
FTGEKIPASQ VPKHMRVGLL DPKWVEQRDR EIREKREQDQ VYASGSVIES NLKQLAQRRS
DIFGVGAEET AIGKTAEEEK EKESKPEKLI WDGHAASAEA VAKRAKDYIT PEDVRAHFEA
EQQKELERAK IGVQLPTQQI PQPTFLMTAP PSQSTAQQMQ QAAFLSGMMM PPPTGYPPFM
HPPPTMMQAP PPAQPPLLPS TTVEEPEAKK SRTTE
//