ID A0A0S6X6Q7_9SPHN Unreviewed; 408 AA.
AC A0A0S6X6Q7;
DT 17-FEB-2016, integrated into UniProtKB/TrEMBL.
DT 17-FEB-2016, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE SubName: Full=Diaminopimelate decarboxylase {ECO:0000313|EMBL:GAM07018.1};
GN ORFNames=MBENS4_4014 {ECO:0000313|EMBL:GAM07018.1};
OS Novosphingobium sp. MBES04.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Novosphingobium.
OX NCBI_TaxID=1206458 {ECO:0000313|EMBL:GAM07018.1};
RN [1] {ECO:0000313|EMBL:GAM07018.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MBES04 {ECO:0000313|EMBL:GAM07018.1};
RA Ohta Y., Nishi S., Kobayashi K., Tsubouchi T., Iida K., Tanizaki A.,
RA Kurosawa K., Adachi A., Nishihara M., Sato R., Hasegawa R., Hatada Y.;
RT "Draft Genome Sequence of Novosphingobium sp. Strain MBES04, Isolated from
RT Sunken Wood from Suruga Bay, Japan.";
RL Genome Announc. 3:e01373-14(2015).
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933,
CC ECO:0000256|PIRSR:PIRSR600183-50};
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-II family.
CC {ECO:0000256|RuleBase:RU003737}.
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DR EMBL; DF850489; GAM07018.1; -; Genomic_DNA.
DR RefSeq; WP_039394007.1; NZ_DF850489.1.
DR AlphaFoldDB; A0A0S6X6Q7; -.
DR STRING; 1206458.MBENS4_4014; -.
DR HOGENOM; CLU_026444_0_3_5; -.
DR OrthoDB; 9802241at2; -.
DR Proteomes; UP000053513; Unassembled WGS sequence.
DR GO; GO:0016830; F:carbon-carbon lyase activity; IEA:UniProt.
DR GO; GO:0006596; P:polyamine biosynthetic process; IEA:InterPro.
DR CDD; cd06839; PLPDE_III_Btrk_like; 1.
DR Gene3D; 3.20.20.10; Alanine racemase; 1.
DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C.
DR InterPro; IPR017530; DCO2ase_PEP1.
DR InterPro; IPR022643; De-COase2_C.
DR InterPro; IPR022644; De-COase2_N.
DR InterPro; IPR000183; Orn/DAP/Arg_de-COase.
DR InterPro; IPR002433; Orn_de-COase.
DR InterPro; IPR029066; PLP-binding_barrel.
DR NCBIfam; TIGR03099; dCO2ase_PEP1; 1.
DR PANTHER; PTHR43727; DIAMINOPIMELATE DECARBOXYLASE; 1.
DR PANTHER; PTHR43727:SF2; DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED; 1.
DR Pfam; PF02784; Orn_Arg_deC_N; 1.
DR Pfam; PF00278; Orn_DAP_Arg_deC; 1.
DR PRINTS; PR01179; ODADCRBXLASE.
DR PRINTS; PR01182; ORNDCRBXLASE.
DR SUPFAM; SSF50621; Alanine racemase C-terminal domain-like; 1.
DR SUPFAM; SSF51419; PLP-binding barrel; 1.
PE 3: Inferred from homology;
KW Pyridoxal phosphate {ECO:0000256|PIRSR:PIRSR600183-50}.
FT DOMAIN 44..290
FT /note="Orn/DAP/Arg decarboxylase 2 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF02784"
FT DOMAIN 291..386
FT /note="Orn/DAP/Arg decarboxylase 2 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF00278"
FT ACT_SITE 359
FT /note="Proton donor"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
FT MOD_RES 67
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
SQ SEQUENCE 408 AA; 42946 MW; 98CC52E2ABD892E9 CRC64;
MKPLGPIPAG FEAIDGVLGV AGRPVTHWVE EAGDTPLFLY SAERIRARIA QLRAAMPKRL
ALHYAVKANP FGPVLSLMHG LVDGFDIASG GELRELLSCG VAGGEISFAG PGKRDRELEA
AIVHGVTLNL ESEGEATRAL ALGQKLGLRP RLAVRVNPDF DLKGSGMKMG GGAKPFGIDA
ERVPALVRRL LDADADWRGF HIFAGSQALD ASAIAETQGQ TLDLAARLAQ EAGKAPPHCN
LGGGLGIPYF GPDTPVDLEA VGGALAQRFE RLPEILQDTR FCMELGRYLV GEAGVYLTRV
LDRKMSHGET FLVTDGGLHH QLAASGNFGT VVRRNYPVAL ATRFGAPVEE EVSIVGCLCT
PLDKLAEKAG FPRADVGDLV AVFCAGAYGA SASPASFLGQ GPALERLV
//
