ID A0A0V0RD89_9BILA Unreviewed; 520 AA.
AC A0A0V0RD89;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 27-MAR-2024, entry version 15.
DE SubName: Full=Retrovirus-related Pol polyprotein from transposon TNT 1-94 {ECO:0000313|EMBL:KRX12468.1};
GN ORFNames=T07_4752 {ECO:0000313|EMBL:KRX12468.1};
OS Trichinella nelsoni.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC Trichinellida; Trichinellidae; Trichinella.
OX NCBI_TaxID=6336 {ECO:0000313|EMBL:KRX12468.1, ECO:0000313|Proteomes:UP000054630};
RN [1] {ECO:0000313|EMBL:KRX12468.1, ECO:0000313|Proteomes:UP000054630}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ISS37 {ECO:0000313|EMBL:KRX12468.1};
RA Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT "Evolution of Trichinella species and genotypes.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRX12468.1}.
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DR EMBL; JYDL01000384; KRX12468.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0V0RD89; -.
DR STRING; 6336.A0A0V0RD89; -.
DR Proteomes; UP000054630; Unassembled WGS sequence.
DR GO; GO:0019899; F:enzyme binding; IEA:UniProt.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR42648:SF22; RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94; 1.
DR PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF00665; rve; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000054630};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 229..244
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 451..520
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
SQ SEQUENCE 520 AA; 59878 MW; 35397B2F24785D4D CRC64;
MSGMATDGDL GKPVIAKLNS SNYQLWKLKM KVLLMRDGLW DLVNQPKPCP IPEDWSRKEC
KAIAAICLTV EDDQLIHLAQ LETAREMWQT LQRLHERASI GSKLYLMRKL YGMRFTHGTM
QSHINGILEI VTQLRGLGKN IEDEDLVAIM LCSLPDSYSA LVTALEGRDE ADLTVEYVSG
KLLDEYQRRT ESCLDQSSNE VALNTTASNA RSQFRASKAT LTKSDNESRR CYYCGKRGHI
KANCHKLKHQ REKDEKARYG VHRNELPPIN QKTNAIQYRT FATKEKAYKG KIGDWYVDSG
ATSHMTCNRK FFESLERRKS TVYLADNTAI QAEAQRITSN GYKIMFQDDT CLISYKKEVV
AEAKLDGSLF KLKQKRQIDT ALSVHTYTCL HKWHRRMGHR DPEAIRKLNK EKLANGIEIC
KCNAENDCEI CLTAIYVVQC QQPLQAIIDR YMMTFIDDYS RFTVVYLLKT KDEAVDRIKD
YVATLHTKFG RNPVTLRTNN GREFVNQRLR NFLREKGIEH
//
