ID A0A0V0YFI8_TRIPS Unreviewed; 1224 AA.
AC A0A0V0YFI8;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE SubName: Full=Protein capicua-like protein {ECO:0000313|EMBL:KRX99080.1};
DE Flags: Fragment;
GN Name=CIC {ECO:0000313|EMBL:KRX99080.1};
GN ORFNames=T4E_6365 {ECO:0000313|EMBL:KRX99080.1};
OS Trichinella pseudospiralis (Parasitic roundworm).
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC Trichinellida; Trichinellidae; Trichinella.
OX NCBI_TaxID=6337 {ECO:0000313|EMBL:KRX99080.1, ECO:0000313|Proteomes:UP000054815};
RN [1] {ECO:0000313|EMBL:KRX99080.1, ECO:0000313|Proteomes:UP000054815}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ISS141 {ECO:0000313|EMBL:KRX99080.1};
RA Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT "Evolution of Trichinella species and genotypes.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRX99080.1}.
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DR EMBL; JYDU01000017; KRX99080.1; -; Genomic_DNA.
DR EMBL; JYDU01000017; KRX99081.1; -; Genomic_DNA.
DR EMBL; JYDU01000017; KRX99085.1; -; Genomic_DNA.
DR EMBL; JYDU01000017; KRX99086.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0V0YFI8; -.
DR Proteomes; UP000054815; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd21990; HMG-box_CIC-like; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR13059; HMG-BOX TRANSCRIPTION FACTOR BBX; 1.
DR PANTHER; PTHR13059:SF16; TRANSCRIPTION FACTOR CAPICUA-RELATED; 1.
DR Pfam; PF00505; HMG_box; 1.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU00267}; Membrane {ECO:0000256|SAM:Phobius};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW ProRule:PRU00267}; Reference proteome {ECO:0000313|Proteomes:UP000054815};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 16..36
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 447..515
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 447..515
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 48..68
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 80..127
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 374..443
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 979..1043
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1109..1147
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1203..1224
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 100..120
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 376..398
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 399..419
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 982..1036
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1109..1131
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1205..1224
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KRX99080.1"
SQ SEQUENCE 1224 AA; 132144 MW; CF8AA147E2235A8D CRC64;
LRRRLIYKLN TSSRSLVHLL MQFIIIIIII ICQVKLVRKI WRKKISSSET ASEPSGYGNM
SPRSNVSADG SMVRVSNVLT PLSSTDSHST GEKCDIPERT DSATSSTENS NSNNANNGGG
SGGGLLLKKK HQKGDVMLTP GGIRKKFNGK QWRRLCSKEG CNKESQRRGY CSRHLSLNGK
AYGFDPCYAS PNFLMMASQD GYGLKESSGV DGLELSSAGH LYSPTMCMLD SSTGIDGSVG
RGEFDDAMAV SSLISLAEAK HSILETQAMQ GHNYRLDLAY SNVASESQQQ QQQLHVGTLL
GERLRTSSLS ASLPYETAIR QSKFQHVLGE NSDDKARCMI VKSSKQGGGG WDFTTGGGFA
TDDRSALVSL GHGEGEVEED DIDDDEDDDD DDVFDNGHED DEYHDKQTRP QESERLGNKR
RAQSLGAMPK DCNVPKSPKK ARDSVHIRRP MNAFMIFSKR HRPLVHQRHP NQDNRTVSKI
LGEWWYALGP EQKQEYHNLA CQVKEAHFKA HPDWKWCNKE KKPVTLKKDD EDVAVATCHA
VEDKTAKDLE TNLTDSNEDV VTVNDHGQQQ KLSSLLDDAN EQQQMRQQQQ FLTGNLSQRV
PCMSQESTSS DVVGSFKSTE PVTTVRPAPT KLSATAAAAI YGHFHHQGMS NSFAAGTHLL
QKLELSRLSL FGRSEAEVPL SSDPVLHSPV LVHSNSVGCF PYPVVSYPGS PGNFSPFIQE
KVATANLVPS VCPSNQTLVF PASASGLEML QRSPRFDVPP SHGCFPHTPL LSPICTPAGL
YATAIAGSAF SPKATSSAAA AAAAAAAAAA AARLPPSHPV VDPFLGNSHT SAELLNVPSG
VDNNSATAGC ESSVSIDQRS SDSTIISVGN ASCCTSLPST PTMVESDRHG AFKAYSTVNT
TALTSAATVN VTAASATVDA SSSMFVTSPS SSGVLDGLSP TMQNKDFDNI RKKHSLTFSA
NSSLSNPTQF ILAPTPAQLG IAPGQTKRSN SSSSNSNSSP LPPFSQSQRS AQTSTSGDSS
TDNKTTEGSN AGGTVASEKS DAVDCSKAVF KRQDSNMDRV LSKVNFGAKF AQLPEFDPDE
CEASSLPTTP SQIVRTYFDK QKQTMPLETN DPTLLSSPSS CKQETDPSPV CSPRTPKTPL
DSWEKSNSRK LLDERRRLVM ELFEKEGMFP SATATTQFQT LHAEVFPTKQ ILQLKIREVR
QKVMASVQSP ATPSLHGASN PQED
//
