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Database: UniProt
Entry: A0A0V1AFY2_9BILA
LinkDB: A0A0V1AFY2_9BILA
Original site: A0A0V1AFY2_9BILA 
ID   A0A0V1AFY2_9BILA        Unreviewed;       779 AA.
AC   A0A0V1AFY2;
DT   16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT   16-MAR-2016, sequence version 1.
DT   08-NOV-2023, entry version 23.
DE   SubName: Full=Autophagy-related protein 16-1 {ECO:0000313|EMBL:KRY23750.1};
GN   Name=ATG16L1 {ECO:0000313|EMBL:KRY23750.1};
GN   ORFNames=T12_8486 {ECO:0000313|EMBL:KRY23750.1};
OS   Trichinella patagoniensis.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC   Trichinellida; Trichinellidae; Trichinella.
OX   NCBI_TaxID=990121 {ECO:0000313|EMBL:KRY23750.1, ECO:0000313|Proteomes:UP000054783};
RN   [1] {ECO:0000313|EMBL:KRY23750.1, ECO:0000313|Proteomes:UP000054783}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ISS2496 {ECO:0000313|EMBL:KRY23750.1};
RA   Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT   "Evolution of Trichinella species and genotypes.";
RL   Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the WD repeat ATG16 family.
CC       {ECO:0000256|ARBA:ARBA00009271}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KRY23750.1}.
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DR   EMBL; JYDQ01000002; KRY23750.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0V1AFY2; -.
DR   Proteomes; UP000054783; Unassembled WGS sequence.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   GO; GO:0000045; P:autophagosome assembly; IEA:InterPro.
DR   GO; GO:0043170; P:macromolecule metabolic process; IEA:UniProt.
DR   GO; GO:0006807; P:nitrogen compound metabolic process; IEA:UniProt.
DR   GO; GO:0044238; P:primary metabolic process; IEA:UniProt.
DR   CDD; cd22887; Atg16_CCD; 1.
DR   CDD; cd00200; WD40; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR045160; ATG16.
DR   InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR   InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR019775; WD40_repeat_CS.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   PANTHER; PTHR19878; AUTOPHAGY PROTEIN 16-LIKE; 1.
DR   PANTHER; PTHR19878:SF8; AUTOPHAGY-RELATED 16, ISOFORM F; 1.
DR   Pfam; PF08614; ATG16; 1.
DR   Pfam; PF00400; WD40; 4.
DR   PRINTS; PR00320; GPROTEINBRPT.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00320; WD40; 6.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS00678; WD_REPEATS_1; 2.
DR   PROSITE; PS50082; WD_REPEATS_2; 4.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 2.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Reference proteome {ECO:0000313|Proteomes:UP000054783};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW   ProRule:PRU00221}.
FT   REPEAT          248..281
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          292..333
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          334..374
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          474..503
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   DOMAIN          570..723
FT                   /note="AAA+ ATPase"
FT                   /evidence="ECO:0000259|SMART:SM00382"
FT   COILED          56..146
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   779 AA;  87970 MW;  4F5C12F0CE55D940 CRC64;
     MSYRDVIFDQ LKCRNQSMND AYMDIYLSYS ELFDAVSHLK SVIKRLSTTD GKGGENEIDK
     EKIRTLETQL LELQQERADL YKKRGENAEM LIELNRKLEE KEDERLLALK QLECNLEEKQ
     KLEAENRKLK ENLENMTKNN QVVRLLKDEH VVLQSTLTVL EGQFQALKVE NAQMLDRWKL
     LNQREADVLN LENDLQMQMR SLKLQYELAE AAEPFVQIDD MENIKDSPSP SISDSSGSFV
     PKSLKCKFEA HDGEVLTLCW GRCGKILATG GTDRRLKLWE IVDGQHGRPA TLMGCNQAVT
     CADFDLNGSL VLAGSNDFAT RIWSVADQRL RHSLTGHSGK VLCAKFVTGG RVITGSHDRT
     IRIWDLQGRS CYRTLLSAST CYDLVAVGNS QSMLISGHFD KKIRFWDDRC QHVVKDMQVG
     GKITSLDIAN DDVNLLCTTR EDLIYCIDLR QCLVKRSFGA DGFKIGYDFV RGKFSPDSHY
     CICGSADGNV YIWNAMSGKL ETVLTSGHSS CVIASMWNLD GTVVATCEKQ KFSMTLKYRT
     ETASQLFSRL NPKPALSISL GGLFPDPLQP KHIVEIVGGS GSGKTLLLLE VIASCIIDLQ
     VGVLLLDCDR HFCLSALVNV LSMRNPGAKD EQALLNCLNR LHSIVCRNDE DLWHSLDFAD
     KIVHRTASLM NVIIIDSVSA FSLTSAGNLR EKHERLVLKV RRTVEEHNLV AFITRQTVTR
     HPDRAEETGR HVSAILDHCW RKANTVRVQT HCFNWNQFQA SVDNRIVHFR SINGRPCFT
//
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