ID A0A0V1D347_TRIBR Unreviewed; 1262 AA.
AC A0A0V1D347;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE SubName: Full=Helicase SKI2W {ECO:0000313|EMBL:KRY55411.1};
DE Flags: Fragment;
GN Name=SKIV2L {ECO:0000313|EMBL:KRY55411.1};
GN ORFNames=T03_10610 {ECO:0000313|EMBL:KRY55411.1};
OS Trichinella britovi (Parasitic roundworm).
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC Trichinellida; Trichinellidae; Trichinella.
OX NCBI_TaxID=45882 {ECO:0000313|EMBL:KRY55411.1, ECO:0000313|Proteomes:UP000054653};
RN [1] {ECO:0000313|EMBL:KRY55411.1, ECO:0000313|Proteomes:UP000054653}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ISS120 {ECO:0000313|EMBL:KRY55411.1};
RA Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT "Evolution of Trichinella species and genotypes.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRY55411.1}.
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DR EMBL; JYDI01000056; KRY55411.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0V1D347; -.
DR Proteomes; UP000054653; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR GO; GO:0006401; P:RNA catabolic process; IEA:InterPro.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.3380.30; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR016438; SKI2-like.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR InterPro; IPR040801; Ski2_N.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF8; HELICASE SKI2W; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF17911; Ski2_N; 1.
DR PIRSF; PIRSF005198; Antiviral_helicase_SKI2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000313|EMBL:KRY55411.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000054653};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884}.
FT DOMAIN 299..455
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 534..735
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 164..188
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 209..234
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 210..233
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KRY55411.1"
SQ SEQUENCE 1262 AA; 144923 MW; D4583D315320B3C2 CRC64;
LLIMENNNGK ENFKNPFQSW LSITQKHELT IEAKALVIDE VLKECCVSSV SCLEADEVPE
YYDTSFEQVS SFTTVDRDYR TGAPIGIIEP LPSDSDSHTT PPLDFTREYN TNSAGVFGNP
QSVPFLPGGM EEDVQKRTSK AKNNNAVYYT AFSGEYLTCA PGLSRGRNFN NSESELSSEE
ESGDDEGKVT VVKSDEQAVL LNEYPANEKK TESTVIEDKR ENEKEETVKE TKAQKNEAPI
VTDNHLHNDE ALNELYKDRA YYYASWTESE ESLAAFELLR PRMAKTFPFE LDLFQKQAIL
CLESGESVFV AAHTSAGKTV VADYAVALAH LNMTRVIYTS PIKALSNQKY RDFKRDYDNV
GIVTGDVQMN PDAFCIVMTT EILRSMLYNG SEVLRELEWV IFDEVHYVNN PERGVVWEEV
IIMLPKHVKL ILLSATVSDV MEFAEWIGRI KQRKIFVVKT SSRPVPLEHH LYLGDIGTTK
NVQIQIVDKD GNFLAENFDH AVRQKENSKA ATSYKNIYKP YTGSGAAEKN LWLSLIQHLK
EKSLLPMVIF VFSRKVCDTL ALMLLKSSLD LTTSSEKRII RKFFKKSISK LSANNKALRQ
VTQLQKMCQI GIAVHHSGVL PLMKEIVEML FQEGRVRVLF ATETFSMGIN MPAKTVVFNS
IDKHDGRTVR LLNPGEYTQM AGRAGRRGLD SSGTVILLCR DKIPHVSDLR TMILGSSPRI
ESQFRVTFTM ILNLLRCQPL SPEMMLMRSF VENLSFRDIM VLNKNIETLM AEQNESQFAN
CVLCSQGNIQ KFYRVAEECY EVARCIIWNV TKLIEPGMVI VVQLLDKWLL GLVLKKHFYK
NEWIFEVFVP YRNLKPKNDK LTPDERCNQF LFYSTELECN LVEPDFRYYS ILEFSLSSIV
HLSNASFSVS NHQIFDDWGL SQNKHNECEN DAILTLIRNL YGVYEYYKSN GTRMRVPLEW
CSLRNARLDI TYLNRLRSSA VKFRCFCCDK FREHFYELYQ IEEKQAEVDD MKRKVDCFKL
RLGPSYEKKR AVLRMMKYID YGDVIQFPGR IACAINQNPL LYSQLLLNNK FADVTPDEVA
AILSASACQY KCKFIAFREP RLQELMNMVC DMDRRIRLVR ERCDDVDDDI DDQLNFGLME
VIQKWSLGMP FGELLKITDA QEGAIVRCIQ RVCELCRDLK TASSLMGNST LTTLLEDTMN
SLKRDIVFTD SLLFSAFFCF VFSPLSVFHF LKAIPEEEKL ACNCYLQKYQ ERNNIEMFPF
SR
//
