ID   A0A0V1L612_9BILA        Unreviewed;       683 AA.
AC   A0A0V1L612;
DT   16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT   16-MAR-2016, sequence version 1.
DT   27-MAR-2024, entry version 18.
DE   SubName: Full=Retrovirus-related Pol polyprotein from transposon 17.6 {ECO:0000313|EMBL:KRZ54970.1};
GN   Name=pol {ECO:0000313|EMBL:KRZ54970.1};
GN   ORFNames=T02_1883 {ECO:0000313|EMBL:KRZ54970.1};
OS   Trichinella nativa.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC   Trichinellida; Trichinellidae; Trichinella.
OX   NCBI_TaxID=6335 {ECO:0000313|EMBL:KRZ54970.1, ECO:0000313|Proteomes:UP000054721};
RN   [1] {ECO:0000313|EMBL:KRZ54970.1, ECO:0000313|Proteomes:UP000054721}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ISS10 {ECO:0000313|EMBL:KRZ54970.1};
RA   Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT   "Evolution of Trichinella species and genotypes.";
RL   Submitted (MAY-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KRZ54970.1}.
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DR   EMBL; JYDW01000126; KRZ54970.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0V1L612; -.
DR   STRING; 6335.A0A0V1L612; -.
DR   Proteomes; UP000054721; Unassembled WGS sequence.
DR   GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR   CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 3.10.20.370; -; 1.
DR   Gene3D; 3.30.70.270; -; 2.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR041373; RT_RNaseH.
DR   PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR   Pfam; PF17917; RT_RNaseH; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   PROSITE; PS50878; RT_POL; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000054721}.
FT   DOMAIN          270..495
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000259|PROSITE:PS50878"
SQ   SEQUENCE   683 AA;  78098 MW;  46AD4CC58A342463 CRC64;
     MKELYGRRVI LMHERANFFR ITQSDHQTLK QFANSLREAA GHCNLETFNT EAALVLQFIN
     GMKNEEIKLR LLAKENIKLD EALSFLEMYE EIYGCNSRSI MKECYAVQET RGIKPRGVSS
     CGKQGDLAKV CKHPQKLGKS EKQRPQNSWK DHKLYADGTY AVKERAHNFE VTVKINGSPK
     RKRATVMLRS FTGHEVNLKG ETMVTVEGNE KAIVRVAKNG ATNVMGQDWI NAFRAAETLR
     SLLANKKEVN AVESRTQNDV CAEFPVVFED GFRHCTAHVE LKDGVVPLFR KPFHWHSQCM
     VQRKKRLNDG LMVESYPTLR PEDLYQALRG GKTFTKLDLS EAYLQVELDE ESKRIPVINT
     HKGLYHYNRL PFSVASAPAI FQKVMDTMLA GIPNVAAYLD DIILTGATDD EHRRTLKLVL
     GRLKEFGLRI RKEKYPKKRT AIVNMPLPTN IAKLRSFLRM YNYYTEFIPK LAEMCSPLNQ
     LLRKDARWKW TGEHTKAVER VKRLLNSPLL LTHYHPEWLI VLAADASNKG IGAVVYHRLS
     DGTVKVIAHA SKKLNAAERN YGQIEKEVLA LVYGVKKLHK YLWGRRFTLL TDHKPLVSIF
     GSKKGVPQMA ACRLTRWAIA LMNYSFDIEY HSTKNFCQAD CLSRLPSSSD ELFDANFDHR
     EAEDELTVKQ LIVELQAELP VTA
//