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Database: UniProt
Entry: A0A127MDM9_9SPHN
LinkDB: A0A127MDM9_9SPHN
Original site: A0A127MDM9_9SPHN 
ID   A0A127MDM9_9SPHN        Unreviewed;       392 AA.
AC   A0A127MDM9;
DT   11-MAY-2016, integrated into UniProtKB/TrEMBL.
DT   11-MAY-2016, sequence version 1.
DT   24-JAN-2024, entry version 27.
DE   SubName: Full=RNA methyltransferase {ECO:0000313|EMBL:AMO71392.1};
GN   ORFNames=AZE99_05540 {ECO:0000313|EMBL:AMO71392.1};
OS   Sphingorhabdus sp. M41.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingorhabdus.
OX   NCBI_TaxID=1806885 {ECO:0000313|EMBL:AMO71392.1, ECO:0000313|Proteomes:UP000073959};
RN   [1] {ECO:0000313|EMBL:AMO71392.1, ECO:0000313|Proteomes:UP000073959}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=M41 {ECO:0000313|EMBL:AMO71392.1,
RC   ECO:0000313|Proteomes:UP000073959};
RA   Shamseldin A., Moawad H., Abd El-Rahim W.M., Sadowsky M.J.;
RL   Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the class I-like SAM-binding methyltransferase
CC       superfamily. RsmB/NOP family. {ECO:0000256|PROSITE-ProRule:PRU01023}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC       feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01023}.
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DR   EMBL; CP014545; AMO71392.1; -; Genomic_DNA.
DR   RefSeq; WP_067198740.1; NZ_CP014545.1.
DR   AlphaFoldDB; A0A127MDM9; -.
DR   STRING; 1806885.AZE99_05540; -.
DR   KEGG; sphg:AZE99_05540; -.
DR   OrthoDB; 9810297at2; -.
DR   Proteomes; UP000073959; Chromosome.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:InterPro.
DR   GO; GO:0001510; P:RNA methylation; IEA:InterPro.
DR   CDD; cd02440; AdoMet_MTases; 1.
DR   Gene3D; 3.40.50.150; Vaccinia Virus protein VP39; 1.
DR   InterPro; IPR001678; MeTrfase_RsmB/NOP2.
DR   InterPro; IPR023267; RCMT.
DR   InterPro; IPR029063; SAM-dependent_MTases_sf.
DR   PANTHER; PTHR22807; NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING; 1.
DR   PANTHER; PTHR22807:SF53; RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE B-RELATED; 1.
DR   Pfam; PF01189; Methyltr_RsmB-F; 1.
DR   PRINTS; PR02008; RCMTFAMILY.
DR   SUPFAM; SSF53335; S-adenosyl-L-methionine-dependent methyltransferases; 1.
DR   PROSITE; PS51686; SAM_MT_RSMB_NOP; 1.
PE   3: Inferred from homology;
KW   Methyltransferase {ECO:0000256|ARBA:ARBA00022603, ECO:0000256|PROSITE-
KW   ProRule:PRU01023};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW   ProRule:PRU01023};
KW   S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691,
KW   ECO:0000256|PROSITE-ProRule:PRU01023};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|PROSITE-
KW   ProRule:PRU01023}.
FT   DOMAIN          112..392
FT                   /note="SAM-dependent MTase RsmB/NOP-type"
FT                   /evidence="ECO:0000259|PROSITE:PS51686"
FT   ACT_SITE        334
FT                   /note="Nucleophile"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01023"
FT   BINDING         233
FT                   /ligand="S-adenosyl-L-methionine"
FT                   /ligand_id="ChEBI:CHEBI:59789"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01023"
FT   BINDING         281
FT                   /ligand="S-adenosyl-L-methionine"
FT                   /ligand_id="ChEBI:CHEBI:59789"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01023"
SQ   SEQUENCE   392 AA;  43028 MW;  5E8814B58C9FF806 CRC64;
     MTPAARLQAA IEMLDWIIAA ARDNGASADN IAKKFFKERR YAGSGDRRAI RELVYSAIRR
     WGDRPESGRQ AMLGLLVEQP ELRELFGGSN YGPAAIAEGE PAASGAQIPD WLVDRFASLI
     DEPERKALFD RAPLHVRVNG QRSTDMEVKS AWPDAVALAL PHGYELPAGS QLEDKALFRE
     GAIEIQDLGS QAIAMAGAAA RPGLVLDLCA GAGGKTLALS AMLPPESKII AADTDRGRLS
     RIEPRKRRAS ARNIETILLA PGKEMESLEH LKASCDLVLI DAPCSGTGTW RRNPELRWRM
     TPKRLEHTAE LQQRLIALGS ELVKPGGRLV YAVCSLLDEE GGDQTDRFLE SHPQWREISI
     DLPIGRPYRK GTLLSPHHDG TDGFYFTCLE KL
//
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