ID A0A133XTR9_9BACT Unreviewed; 474 AA.
AC A0A133XTR9;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:KXB34309.1};
GN ORFNames=HMPREF1869_01221 {ECO:0000313|EMBL:KXB34309.1};
OS Bacteroidales bacterium KA00251.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales.
OX NCBI_TaxID=1497953 {ECO:0000313|EMBL:KXB34309.1, ECO:0000313|Proteomes:UP000070662};
RN [1] {ECO:0000313|EMBL:KXB34309.1, ECO:0000313|Proteomes:UP000070662}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KA00251 {ECO:0000313|EMBL:KXB34309.1,
RC ECO:0000313|Proteomes:UP000070662};
RA Oliw E.H.;
RL Submitted (JAN-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KXB34309.1}.
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DR EMBL; LSCS01000080; KXB34309.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A133XTR9; -.
DR STRING; 1497953.HMPREF1869_01221; -.
DR PATRIC; fig|1497953.3.peg.1212; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000070662; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000070662};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 100..293
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 314..472
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 474 AA; 54773 MW; CD28AC6EFD888763 CRC64;
MNKQSLQQNQ RQSLSSRQIF QIKLLELPLS KLEERIKEEL IVNPALEQVR EDPNEPSKEE
ELKSAEETIA DDYLTEDDIP DYKLKILQDQ REEMGEIPLQ SDSKSLQQYL TEQLNMLNLE
KKEQLIAEQI IGNLSEDGYL RASTREIEDY LLFNENLSCN KEELEKALQK VQSLDPPGVA
ARDLQESLLI QLRRLPESKE RELALKVTKD YFEDLGNRRY EQICSKLKLT TEEFKAVQHT
ITSLNPKPGN GFGSDFSAMA SRITPDFIVR LSENGFRVWL NEEGRIPQLR VNPGFLQLSE
EKIEENKEKK EEQSYAKQQV SQAKWFIEAI EMRRNTLLRC MEVIVSLQAD FFRSGDVHDI
KPMILQDVAE RTGHDVSTIS RISNEKFVEC DYGIYALKFF FNEGGQKEDG NEISSLSIKA
LLQEIVDGEN KKKPLTDEKI AQIMTEKGVA IARRTLAKYR EQLGILPARL RRKL
//
