ID A0A151MEP5_ALLMI Unreviewed; 618 AA.
AC A0A151MEP5;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE SubName: Full=Putative RNA-binding protein 15B {ECO:0000313|EMBL:KYO22969.1};
GN Name=RBM15B {ECO:0000313|EMBL:KYO22969.1};
GN ORFNames=Y1Q_0005470 {ECO:0000313|EMBL:KYO22969.1};
OS Alligator mississippiensis (American alligator).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae;
OC Alligator.
OX NCBI_TaxID=8496 {ECO:0000313|EMBL:KYO22969.1};
RN [1] {ECO:0000313|EMBL:KYO22969.1, ECO:0000313|Proteomes:UP000050525}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KSC_2009_1 {ECO:0000313|EMBL:KYO22969.1};
RX PubMed=22293439; DOI=10.1186/gb-2012-13-1-415;
RA St John J.A., Braun E.L., Isberg S.R., Miles L.G., Chong A.Y., Gongora J.,
RA Dalzell P., Moran C., Bed'hom B., Abzhanov A., Burgess S.C., Cooksey A.M.,
RA Castoe T.A., Crawford N.G., Densmore L.D., Drew J.C., Edwards S.V.,
RA Faircloth B.C., Fujita M.K., Greenwold M.J., Hoffmann F.G., Howard J.M.,
RA Iguchi T., Janes D.E., Khan S.Y., Kohno S., de Koning A.J., Lance S.L.,
RA McCarthy F.M., McCormack J.E., Merchant M.E., Peterson D.G., Pollock D.D.,
RA Pourmand N., Raney B.J., Roessler K.A., Sanford J.R., Sawyer R.H.,
RA Schmidt C.J., Triplett E.W., Tuberville T.D., Venegas-Anaya M.,
RA Howard J.T., Jarvis E.D., Guillette L.J.Jr., Glenn T.C., Green R.E.,
RA Ray D.A.;
RT "Sequencing three crocodilian genomes to illuminate the evolution of
RT archosaurs and amniotes.";
RL Genome Biol. 13:415-415(2012).
CC -!- SIMILARITY: Belongs to the RRM Spen family.
CC {ECO:0000256|ARBA:ARBA00005387}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KYO22969.1}.
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DR EMBL; AKHW03006215; KYO22969.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A151MEP5; -.
DR STRING; 8496.A0A151MEP5; -.
DR eggNOG; KOG0112; Eukaryota.
DR Proteomes; UP000050525; Unassembled WGS sequence.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IEA:UniProt.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd12556; RRM2_RBM15B; 1.
DR CDD; cd12558; RRM3_RBM15B; 1.
DR CDD; cd21550; SPOC_RBM15B; 1.
DR Gene3D; 2.40.290.10; -; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR034535; RBM15B_RRM2.
DR InterPro; IPR034536; RBM15B_RRM3.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR016194; SPOC-like_C_dom_sf.
DR InterPro; IPR012921; SPOC_C.
DR InterPro; IPR010912; SPOC_met.
DR PANTHER; PTHR23189; RNA RECOGNITION MOTIF-CONTAINING; 1.
DR PANTHER; PTHR23189:SF40; RNA-BINDING PROTEIN 15B-RELATED; 1.
DR Pfam; PF00076; RRM_1; 2.
DR Pfam; PF07744; SPOC; 1.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR SUPFAM; SSF100939; SPOC domain-like; 1.
DR PROSITE; PS50102; RRM; 2.
DR PROSITE; PS50917; SPOC; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000050525};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 70..147
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 151..225
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 438..617
FT /note="SPOC"
FT /evidence="ECO:0000259|PROSITE:PS50917"
FT REGION 295..435
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 295..349
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 361..378
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 391..435
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 618 AA; 69407 MW; 4A2E89000FDD6675 CRC64;
MTPLLREPRP RHAHAAAAAF ALEAAAIGLS RERERALDYY GLYDERGRPY SYPIVAEEDL
MPEDDQRATR NLFIGNLDHN VSEVELRRAF EKYGIIEEVV IKRPARGQGG AYAFLKFQNL
DMAHRAKVAM SGRVVGRNPI KIGYGKANPT TRLWVGGLGP STSLAALARE FDRFGSIRTI
DYVKGDSFAY IQYESLDAAQ AACAQMRGFP LGGPERRLRV DFAKAEETRY PQQYQPAPLP
VHYELLADGY SRHRSLEQDL RVRDRTPPHL LYSDRDRSFA EADWASPAKN AERRNNLESY
SRSVRSRSGE RWGSDSDRNV PKPWDERRKR RSLSSDRGRT THSPYEDRGR TKATSGPASD
RSPERARKEN HTTESGTEKE QRNSLQNNQH VAEEKPHRET SDPPQSKKRD SERNHRTGES
ESKSHEEPKS ETKKLKNLSE YAQTLQLAWN GLLVLKNSCF PTSMHILEGD LGVISGLLKD
HSTGGKLTQL KIAQRLRLDQ PKLDEVTRRI KQGSPNGYAV LLATQATQGG AGAEGTLPVV
EPGLQRRLLR NLVSYLKQKQ AAGVISLPVG GAKGRDSTGM LYAFPPCEFS QQYLQSALRT
LGKLEEEHMV IVIVKDTA
//
