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Database: UniProt
Entry: A0A151MSD8_ALLMI
LinkDB: A0A151MSD8_ALLMI
Original site: A0A151MSD8_ALLMI 
ID   A0A151MSD8_ALLMI        Unreviewed;       246 AA.
AC   A0A151MSD8;
DT   08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT   08-JUN-2016, sequence version 1.
DT   24-JAN-2024, entry version 21.
DE   SubName: Full=Iroquois-class homeodomain protein IRX-3 {ECO:0000313|EMBL:KYO27329.1};
GN   Name=IRX3 {ECO:0000313|EMBL:KYO27329.1};
GN   ORFNames=Y1Q_0021249 {ECO:0000313|EMBL:KYO27329.1};
OS   Alligator mississippiensis (American alligator).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae;
OC   Alligator.
OX   NCBI_TaxID=8496 {ECO:0000313|EMBL:KYO27329.1};
RN   [1] {ECO:0000313|EMBL:KYO27329.1, ECO:0000313|Proteomes:UP000050525}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=KSC_2009_1 {ECO:0000313|EMBL:KYO27329.1};
RX   PubMed=22293439; DOI=10.1186/gb-2012-13-1-415;
RA   St John J.A., Braun E.L., Isberg S.R., Miles L.G., Chong A.Y., Gongora J.,
RA   Dalzell P., Moran C., Bed'hom B., Abzhanov A., Burgess S.C., Cooksey A.M.,
RA   Castoe T.A., Crawford N.G., Densmore L.D., Drew J.C., Edwards S.V.,
RA   Faircloth B.C., Fujita M.K., Greenwold M.J., Hoffmann F.G., Howard J.M.,
RA   Iguchi T., Janes D.E., Khan S.Y., Kohno S., de Koning A.J., Lance S.L.,
RA   McCarthy F.M., McCormack J.E., Merchant M.E., Peterson D.G., Pollock D.D.,
RA   Pourmand N., Raney B.J., Roessler K.A., Sanford J.R., Sawyer R.H.,
RA   Schmidt C.J., Triplett E.W., Tuberville T.D., Venegas-Anaya M.,
RA   Howard J.T., Jarvis E.D., Guillette L.J.Jr., Glenn T.C., Green R.E.,
RA   Ray D.A.;
RT   "Sequencing three crocodilian genomes to illuminate the evolution of
RT   archosaurs and amniotes.";
RL   Genome Biol. 13:415-415(2012).
CC   -!- SIMILARITY: Belongs to the TALE/IRO homeobox family.
CC       {ECO:0000256|ARBA:ARBA00008446}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KYO27329.1}.
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DR   EMBL; AKHW03005226; KYO27329.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A151MSD8; -.
DR   STRING; 8496.A0A151MSD8; -.
DR   eggNOG; KOG0773; Eukaryota.
DR   Proteomes; UP000050525; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd00086; homeodomain; 1.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR001356; Homeobox_dom.
DR   InterPro; IPR008422; Homeobox_KN_domain.
DR   PANTHER; PTHR11211; IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX; 1.
DR   PANTHER; PTHR11211:SF14; IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX-3; 1.
DR   Pfam; PF05920; Homeobox_KN; 1.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000313|EMBL:KYO27329.1};
KW   Homeobox {ECO:0000256|ARBA:ARBA00023155, ECO:0000313|EMBL:KYO27329.1};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000050525}.
FT   DOMAIN          65..96
FT                   /note="Homeobox KN"
FT                   /evidence="ECO:0000259|Pfam:PF05920"
FT   REGION          96..210
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        114..128
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        129..172
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   246 AA;  26904 MW;  2DCC0DA0F0CA5CCE CRC64;
     MYGAPYAAAA AAQGYGAFLP YTAELPIFPQ LGAQYELKDG PGYQFGDPSR PKNATRESTS
     TLKAWLNEHR KNPYPTKGEK IMLAIITKMT LTQVSTCRTD EEGNSYGSDH EGEEDKREDE
     EEIDLENIDT ENIESHKDEL EDELQDADLL HSDAKTDSEG SDGFEDLPGA DERFLKAPLP
     LAPPPPAPHR LVSPADQAQS AEAAGTDRSS ALEVEKKLIK TAFQPVQRRP QNQLDAAMVL
     SALSSS
//
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