ID A0A151NNN6_ALLMI Unreviewed; 1053 AA.
AC A0A151NNN6;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 24-JAN-2024, entry version 33.
DE SubName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 isoform A {ECO:0000313|EMBL:KYO38259.1};
GN Name=SMARCA5 {ECO:0000313|EMBL:KYO38259.1};
GN ORFNames=Y1Q_0015534 {ECO:0000313|EMBL:KYO38259.1};
OS Alligator mississippiensis (American alligator).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae;
OC Alligator.
OX NCBI_TaxID=8496 {ECO:0000313|EMBL:KYO38259.1};
RN [1] {ECO:0000313|EMBL:KYO38259.1, ECO:0000313|Proteomes:UP000050525}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KSC_2009_1 {ECO:0000313|EMBL:KYO38259.1};
RX PubMed=22293439; DOI=10.1186/gb-2012-13-1-415;
RA St John J.A., Braun E.L., Isberg S.R., Miles L.G., Chong A.Y., Gongora J.,
RA Dalzell P., Moran C., Bed'hom B., Abzhanov A., Burgess S.C., Cooksey A.M.,
RA Castoe T.A., Crawford N.G., Densmore L.D., Drew J.C., Edwards S.V.,
RA Faircloth B.C., Fujita M.K., Greenwold M.J., Hoffmann F.G., Howard J.M.,
RA Iguchi T., Janes D.E., Khan S.Y., Kohno S., de Koning A.J., Lance S.L.,
RA McCarthy F.M., McCormack J.E., Merchant M.E., Peterson D.G., Pollock D.D.,
RA Pourmand N., Raney B.J., Roessler K.A., Sanford J.R., Sawyer R.H.,
RA Schmidt C.J., Triplett E.W., Tuberville T.D., Venegas-Anaya M.,
RA Howard J.T., Jarvis E.D., Guillette L.J.Jr., Glenn T.C., Green R.E.,
RA Ray D.A.;
RT "Sequencing three crocodilian genomes to illuminate the evolution of
RT archosaurs and amniotes.";
RL Genome Biol. 13:415-415(2012).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. ISWI subfamily.
CC {ECO:0000256|ARBA:ARBA00009687}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KYO38259.1}.
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DR EMBL; AKHW03002524; KYO38259.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A151NNN6; -.
DR eggNOG; KOG0385; Eukaryota.
DR Proteomes; UP000050525; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0031491; F:nucleosome binding; IEA:InterPro.
DR CDD; cd18065; DEXHc_SMARCA1; 1.
DR CDD; cd00167; SANT; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 2.
DR Gene3D; 1.20.5.1190; iswi atpase; 1.
DR Gene3D; 1.10.1040.30; ISWI, HAND domain; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR015194; ISWI_HAND-dom.
DR InterPro; IPR036306; ISWI_HAND-dom_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR InterPro; IPR015195; SLIDE.
DR InterPro; IPR044755; SMARCA1_N.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR000330; SNF2_N.
DR PANTHER; PTHR45623; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED; 1.
DR PANTHER; PTHR45623:SF49; ISW-1; 1.
DR Pfam; PF09110; HAND; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF09111; SLIDE; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF101224; HAND domain of the nucleosome remodeling ATPase ISWI; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51293; SANT; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000050525}.
FT DOMAIN 167..332
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 462..613
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT DOMAIN 815..867
FT /note="SANT"
FT /evidence="ECO:0000259|PROSITE:PS51293"
FT REGION 1..58
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 108..131
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 777..807
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 991..1025
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..20
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 43..58
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 787..807
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1053 AA; 122698 MW; 5F3235DD9CA75059 CRC64;
MDSGPDSPGR SDDEHGAGLT RRLPEPLVLQ KNDPPFQLKL PPKAARPEKE IDPEYEEKMK
TDRAKRFEFL LKQTELFAHF IQPAAQKSPT SPLKVKLGRP RIKKDEKQSL ISAGDYRHRR
TEQEEDEELL SESRKTSNVC VRFEESPSYV KGGTLRDYQV RGLNWMISLY ENGVNGILAD
EMGLGKTLQT IALLGYLKHY RNIPGPHMVL VPKSTLHNWM NEFKRWVPSL RAVCLIGDKD
ARAAFIRDVM MPGEWDVCVT SYEMVIKEKS VFKKFNWRYL VIDEAHRIKN EKSKLSEIVR
EFKTTNRLLL TGTPLQNNLH ELWALLNFLL PDVFNSADDF DSWFDTKNCL GDQKLVERLH
AVLKPFLLRR IKGEVEKSLP PKKEVKIYLG LSKMQREWYT RILMKDIDIL NSAGKMDKMR
LLNILMQLRK CCNHPYLFDG AEPGPPYTTD THLVNNSGKM VALDKLLAKL KEQGSRVLIF
SQMTRLLDIL EDYCMWRGYE YCRLDGQTPH EEREEAIDTF NAPNSSKFIF MLSTRAGGLG
INLATADVVI LYDSDWNPQV DLQAMDRAHR IGQKKPVRVF RLITENTVEE RIVERAEIKL
RLDSIVIQQG RLIDQQSNKL AKDEMLQMIR HGATHVFASK DSELTDEDIT TILERGEKKT
AEMNERLQKM GESSLRNFTM DTEMSLYTFE GEDYREKQKM SMMEWIEPPK RERKANYAVD
AYFREALRVS EPKIPKAPRP PKQPNIQDFQ FFPPRLFELL EKEILYYRKT IGYKVPRNPD
LPNAAQAQKE EQKKIDESAP LTPEETEEKE KLLTQGFTNW NKRDFNQFIK ANEKYGRDDI
DNIAREVEGK SPEEVIEYSA VFWERCNELQ DIERIMAQIE RGEARIQRRI SIKKALDAKI
ARYKAPFHQL RIQYGTNKGK NYTEEEDRFL ICMLHKMGFD KENVYEELRQ CVRNAPQFRF
DWFIKSRTAM EFQRRCNTLI SLIEKENMEI EEKERAEKKK RGTKVPASQK RKADSATESS
GKKDAKKVKS LFLNEISLLM VGRSLAYEVA ESS
//