ID   A0A151QVB0_CAJCA        Unreviewed;      1102 AA.
AC   A0A151QVB0;
DT   08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT   08-JUN-2016, sequence version 1.
DT   27-MAR-2024, entry version 21.
DE   SubName: Full=Retrovirus-related Pol polyprotein from transposon TNT 1-94 {ECO:0000313|EMBL:KYP34307.1};
GN   ORFNames=KK1_044762 {ECO:0000313|EMBL:KYP34307.1};
OS   Cajanus cajan (Pigeon pea) (Cajanus indicus).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus.
OX   NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP34307.1, ECO:0000313|Proteomes:UP000075243};
RN   [1] {ECO:0000313|EMBL:KYP34307.1, ECO:0000313|Proteomes:UP000075243}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243};
RX   PubMed=22057054; DOI=10.1038/nbt.2022;
RA   Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., Schlueter J.A.,
RA   Donoghue M.T., Azam S., Fan G., Whaley A.M., Farmer A.D., Sheridan J.,
RA   Iwata A., Tuteja R., Penmetsa R.V., Wu W., Upadhyaya H.D., Yang S.P.,
RA   Shah T., Saxena K.B., Michael T., McCombie W.R., Yang B., Zhang G.,
RA   Yang H., Wang J., Spillane C., Cook D.R., May G.D., Xu X., Jackson S.A.;
RT   "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop
RT   of resource-poor farmers.";
RL   Nat. Biotechnol. 30:83-89(2012).
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DR   EMBL; KQ484629; KYP34307.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A151QVB0; -.
DR   Proteomes; UP000075243; Unassembled WGS sequence.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR025724; GAG-pre-integrase_dom.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR013103; RVT_2.
DR   PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR   PANTHER; PTHR42648:SF11; TRANSPOSON TY4-P GAG-POL POLYPROTEIN; 1.
DR   Pfam; PF13976; gag_pre-integrs; 1.
DR   Pfam; PF14223; Retrotran_gag_2; 1.
DR   Pfam; PF00665; rve; 1.
DR   Pfam; PF07727; RVT_2; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000075243}.
FT   DOMAIN          598..768
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   REGION          1..36
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          266..286
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          343..362
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          738..818
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..30
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        738..752
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        765..802
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1102 AA;  123286 MW;  D007413D828AD2E1 CRC64;
     MNSSPPPPPP PPIHANPVNT VPPKNPPPNS HPSLTFSHTI SEKLDTKNYL LWCQQVEPVI
     KGHRLHHYLV NPQIPQKFAT LADRDAGRIS ESYLAWEQQD QLLLSWLQSS MSKDMLTRVI
     GCKSSFQLWD KIHSYFHSHM NAKARQLRNE LRNTSLENLS ISEYVLRIQT LVDALTAIGN
     SVSPKEHLDI ILEGLPEEYE STVSLISSHF DLLTIDEVET LLLGHESRLD KFKKKVAASI
     NVTTTTTEPN PSVTNPQAHL AHQENQSGFS HRQGGRTNFR GGRFSNRAGR GRGRFAGYQC
     QVCHRYGHVA SACYYRFDET YVPSSPLEAP AYHSINQHTN PGAWYSNQTA SPSSHRNEIL
     GPRPQFTPQV QFTSTQAQPQ AMIASSSSSS INNWYPDSRA SNHVTNVSQN IHQFTPFEGP
     DQIHVGNGQG LHINSTGVTT FHSPINPKFQ FALNNLLFVP SITKNLISVS QFSKDNSVYF
     EFHPYICLVK SQDTKEVLLQ GLVGPDGLYQ FPTLLPTPSP QSVQQVQPAR TFSVNTATKS
     SISFATWHSR LGHPNVDVMK HVSRNFNIQL VTNNKSNFCT PCCLGKSHRL PSNLSKTIYN
     TPFDLVYNDL WGPAPVTSTC GYQYYVTFVD AHTRFTWIYL LKNKAQTFNV FKQFHAMVNN
     QYHHPIKALQ TDWGGEYRSF TNYLNEVGIQ HRLICPHTHH QNGVVERKHR HIVELVNETK
     FPYKELFTSS KASVSHHPIS VPLTINPTPT PTHETRPTSP NPPATSPSLT SDSYSPNTAA
     PDTSPSTLSI PTSSNLEPSS SPVIHPHNVH PMTTRAKDGI VKPRLQPTLL LTQVEPKTTK
     QALSNPTWSA AMQTEYNALL HNNTWSLVPL PPHRTAIGCK WVFRVKENPN GTVQKYKARL
     VAKGFNQQFG FDYHETFSPV IKPVTVRLIL TLAGQPASSP SSLSIHAYCD ADWASDPDDR
     RSTFGASIFL GPNLVSWWSK KQTVVARSST EAEYRSLALA TTEVTRIQTL PSELKVSHST
     PIIFCDNLST VALAHNPVLH ARTKHMELDL FFVREKVAAK CLQVVHVPAI DQCADVLTKA
     LSPSRFCDLR SKLQVVESPY PT
//