ID A0A162EDH7_9CRUS Unreviewed; 1033 AA.
AC A0A162EDH7;
DT 06-JUL-2016, integrated into UniProtKB/TrEMBL.
DT 06-JUL-2016, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE RecName: Full=Reverse transcriptase domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=APZ42_026367 {ECO:0000313|EMBL:KZS09420.1};
OS Daphnia magna.
OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda;
OC Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia.
OX NCBI_TaxID=35525 {ECO:0000313|EMBL:KZS09420.1, ECO:0000313|Proteomes:UP000076858};
RN [1] {ECO:0000313|EMBL:KZS09420.1, ECO:0000313|Proteomes:UP000076858}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Xinb3 {ECO:0000313|EMBL:KZS09420.1,
RC ECO:0000313|Proteomes:UP000076858};
RC TISSUE=Complete organism {ECO:0000313|EMBL:KZS09420.1};
RA Gilbert D.G., Choi J.-H., Mockaitis K., Colbourne J., Pfrender M.;
RT "EvidentialGene: Evidence-directed Construction of Genes on Genomes.";
RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KZS09420.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; LRGB01002068; KZS09420.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A162EDH7; -.
DR Proteomes; UP000076858; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0071897; P:DNA biosynthetic process; IEA:UniProt.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR CDD; cd09275; RNase_HI_RT_DIRS1; 1.
DR CDD; cd03714; RT_DIRS1; 1.
DR Gene3D; 1.10.150.130; -; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 1.10.443.10; Intergrase catalytic core; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR011010; DNA_brk_join_enz.
DR InterPro; IPR013762; Integrase-like_cat_sf.
DR InterPro; IPR002104; Integrase_catalytic.
DR InterPro; IPR010998; Integrase_recombinase_N.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR000477; RT_dom.
DR PANTHER; PTHR35617:SF3; CORE-BINDING (CB) DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR35617; PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00589; Phage_integrase; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF56349; DNA breaking-rejoining enzymes; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF47823; lambda integrase-like, N-terminal domain; 1.
DR PROSITE; PS50878; RT_POL; 1.
DR PROSITE; PS51898; TYR_RECOMBINASE; 1.
PE 4: Predicted;
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000076858};
KW Transposable element {ECO:0000256|ARBA:ARBA00022464}.
FT DOMAIN 288..470
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 828..1032
FT /note="Tyr recombinase"
FT /evidence="ECO:0000259|PROSITE:PS51898"
FT REGION 136..201
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 136..161
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 168..189
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1033 AA; 115557 MW; 43B73431DF8C4B56 CRC64;
MPPKLDAWMS RRSKDKGVLK AVNVKEEALI RTQLKIMDIG PPLIDLYARL AKMEEATTSD
MRRSVQAALQ QWGRAFAHVS KKRRESVVHF TDPRVEYLLK DDSCFATGKE ARELLFTGRF
LEKMLTEANQ DETLARRDKA VAATDRRNPV RSTRRDQLLP PSTRHTHYGG HQYERGSRAR
GRRGGGDPRG GRGRGNPNPR RYEFLTPCNI QAHPIVSISL KVGARLSVFA DKWSEITDDP
WVLKTISNGL KIDFLSEPFQ RSSPRDVVMS DEMRAVCQTE IASLLKKGAV KEITDESGGF
ICSFFCVPKK VDGFRPIVNL KPLNKFIKYE HFKMENLETV RSLVRKGDWF VKLDLKDAYL
TVPVYCPQQK FLRFKWEGRV FQFKCMAFGL APAPRIFTKI LKVVVAFFRK QGIRLVVYLD
DFLVMNETEN ATRADLKTVL DLLNALGFLI NWDKSVTVPT QTIEYLGMVV DSNRLSFSLP
SAKVEDVKNM CRKALADGIV SLRTIASILG NFTWAIPTIP FAQSHYRSMQ RFYITESQKV
RNDLSVKLTL SPGSVADLEW WLFNLESSNG KDFFPRSPDI EIFSDASLSG WGAVCDGVTT
RGPWTSEQAD LHINSLELLG ALYALQSFAE KARGLSIRMF LDNSTAVCYM NKGGGTRSSE
LTAVANLAIS TMVSGPPGIG MRRPDPSCSF SRSAEISNGR DAPSVVNRLA TASRLEIIRR
YFRREGFSES LVELLLAGNR TNTHSTYESA WRNWSDWCFS RNENPLSVPL VSILEFLSGL
HRDGKSYSSV NIHRSMLSKT LPTVDGHPIG IHPLVKSLLN GCYNLNPPKP RYNYAWDPSV
VINYMSKLGN NAFIPLPSLT KKTAVLLALA SLLRVSELAA IDYQSVIFSE DDVKFTLLRI
RKSQRGGPLQ SVIIPKLLDA NCCPVQALKA YVDRTSTIRE SNIKQLFVST IAPHAGVTAN
TMSKWIRSAL NVSGVDTSIF KAHSTRGAAA SKASASGIST DEILKAGHWK SESTFGRFYK
RVIAPSIVPA GRK
//