ID   A0A164LJF3_9CRUS        Unreviewed;       893 AA.
AC   A0A164LJF3;
DT   06-JUL-2016, integrated into UniProtKB/TrEMBL.
DT   06-JUL-2016, sequence version 1.
DT   27-MAR-2024, entry version 19.
DE   RecName: Full=Retrotransposon gag domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=APZ42_032944 {ECO:0000313|EMBL:KZS04169.1};
OS   Daphnia magna.
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda;
OC   Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia.
OX   NCBI_TaxID=35525 {ECO:0000313|EMBL:KZS04169.1, ECO:0000313|Proteomes:UP000076858};
RN   [1] {ECO:0000313|EMBL:KZS04169.1, ECO:0000313|Proteomes:UP000076858}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Xinb3 {ECO:0000313|EMBL:KZS04169.1,
RC   ECO:0000313|Proteomes:UP000076858};
RC   TISSUE=Complete organism {ECO:0000313|EMBL:KZS04169.1};
RA   Gilbert D.G., Choi J.-H., Mockaitis K., Colbourne J., Pfrender M.;
RT   "EvidentialGene: Evidence-directed Construction of Genes on Genomes.";
RL   Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KZS04169.1}.
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DR   EMBL; LRGB01003128; KZS04169.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A164LJF3; -.
DR   STRING; 35525.A0A164LJF3; -.
DR   Proteomes; UP000076858; Unassembled WGS sequence.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0004190; F:aspartic-type endopeptidase activity; IEA:InterPro.
DR   GO; GO:0006508; P:proteolysis; IEA:InterPro.
DR   CDD; cd00303; retropepsin_like; 1.
DR   Gene3D; 2.40.70.10; Acid Proteases; 1.
DR   InterPro; IPR001969; Aspartic_peptidase_AS.
DR   InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR   PANTHER; PTHR33223; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR33223:SF6; TY3_CAPSID DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF13975; gag-asp_proteas; 1.
DR   SUPFAM; SSF50630; Acid proteases; 1.
DR   PROSITE; PS00141; ASP_PROTEASE; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils}; Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000076858};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        45..64
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   REGION          123..157
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          340..384
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          298..339
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COILED          557..584
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        347..369
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        370..384
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   893 AA;  101402 MW;  8CA71EB266DEC159 CRC64;
     MAAIGAGAAA LGAAAPGAAA GAICAVAWFW SIRSSVSVAR SLSSSAVMET LLYCFILSIF
     LQLLPATATP PSKKVVTWQI HRLETFTFGG PNETLEEKFL VCASFASCKC STLLSTSLQA
     TDIGKPSSNQ EPIAEPSQKK RGKQRSCRDR RARNNQKFEG ERTRLNQKLN TAENQIKQVS
     ETAEQLQKEI KVLADRLDKA TTEKINLKKN LLDFTSKNKN LEKELQELQN RVQRQENQTI
     IQENRGKEYK KLQVKFIETE DSNDSRLDKD EPGEITKLVG DINELILPTD SGVKSLHYEL
     EIKQTNDFEQ KIENLKTQIE HLNKKIIYLE KENQQLKKKV DMGVTQGDEE TSKNTTQKTF
     ANTSKKNPKD NDIPTTEQDD EDAKKVNRYF TQPLVKALGE LFSIEDKKAI PIFKGKSTDK
     LISEWLRGAE HVARNNEWDD NKKIRFFSDR LKGEAFEWHE NYAEEEGDDL NSQDWKEALI
     TRFQDTYDLA TLEKKPKENC RAFVSRLNNL YDTNAENTED FDALCKQLFI SEKILHTKEA
     TDDKEMSAVI AEIMHHEKQQ DDKIQLLEQK LSEALSELKF TNTKRESSQE NDVTIAATDQ
     YEKGRPRSII TPENQAEKEL SVKTETTAPI AEIKIHQDEE IIILQDTGNP DFHLTNVPHI
     GTNTPTGSDV EVEIPKLIRI PVKIFNKEII ALVDTGAATS LVSSKILDTL ECNEYLKQVK
     NTNTPIFRMV SGQELKSIGK FEFSVVINDY HIFNHHFYVM NNLNEQCILG LHFLSNNNVK
     INTRNRQICH DHFGVEHNFG SNTMPIYSVT FSNAGIHIPL NPIDRGDEDL TQQDYRNLQS
     FTKLDFNNKT NQIAKIAENV LNVSDDIQTK IEILLKKHEG LFADQESDLG LAT
//