ID A0A183BQJ6_GLOPA Unreviewed; 733 AA.
AC A0A183BQJ6;
DT 07-SEP-2016, integrated into UniProtKB/TrEMBL.
DT 07-SEP-2016, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE SubName: Full=C3H1-type domain-containing protein {ECO:0000313|WBParaSite:GPLIN_000288200};
OS Globodera pallida (Potato cyst nematode).
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Tylenchina; Tylenchomorpha; Tylenchoidea; Heteroderidae; Heteroderinae;
OC Globodera.
OX NCBI_TaxID=36090 {ECO:0000313|Proteomes:UP000050741, ECO:0000313|WBParaSite:GPLIN_000288200};
RN [1] {ECO:0000313|Proteomes:UP000050741}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Lindley {ECO:0000313|Proteomes:UP000050741};
RA Aslett M.;
RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000050741}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Lindley {ECO:0000313|Proteomes:UP000050741};
RA Cotton J.A., Lilley C.J., Jones L.M., Kikuchi T., Reid A.J., Thorpe P.,
RA Tsai I.J., Beasley H., Blok V., Cock P.J.A., Van den Akker S.E.,
RA Holroyd N., Hunt M., Mantelin S., Naghra H., Pain A., Palomares-Rius J.E.,
RA Zarowiecki M., Berriman M., Jones J.T., Urwin P.E.;
RT "The genome and life-stage specific transcriptomes of Globodera pallida
RT elucidate key aspects of plant parasitism by a cyst nematode.";
RL Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|WBParaSite:GPLIN_000288200}
RP IDENTIFICATION.
RG WormBaseParasite;
RL Submitted (JUN-2016) to UniProtKB.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU00124}.
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DR AlphaFoldDB; A0A183BQJ6; -.
DR WBParaSite; GPLIN_000288200; GPLIN_000288200; GPLIN_000288200.
DR Proteomes; UP000050741; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd00112; LDLa; 5.
DR Gene3D; 4.10.1220.10; EGF-type module; 1.
DR Gene3D; 4.10.400.10; Low-density Lipoprotein Receptor; 5.
DR Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 1.
DR InterPro; IPR036055; LDL_receptor-like_sf.
DR InterPro; IPR023415; LDLR_class-A_CS.
DR InterPro; IPR002172; LDrepeatLR_classA_rpt.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR24270:SF66; CUB AND LDLA DOMAIN, ISOFORM A-RELATED; 1.
DR PANTHER; PTHR24270; LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED; 1.
DR Pfam; PF00057; Ldl_recept_a; 2.
DR Pfam; PF00642; zf-CCCH; 1.
DR PRINTS; PR00261; LDLRECEPTOR.
DR SMART; SM00192; LDLa; 8.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; CCCH zinc finger; 1.
DR SUPFAM; SSF57424; LDL receptor-like module; 5.
DR PROSITE; PS01209; LDLRA_1; 1.
DR PROSITE; PS50068; LDLRA_2; 6.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW Disulfide bond {ECO:0000256|ARBA:ARBA00023157, ECO:0000256|PROSITE-
KW ProRule:PRU00124}; Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT TRANSMEM 218..241
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 118..146
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 118..146
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 89..112
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 89..104
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT DISULFID 321..336
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00124"
FT DISULFID 384..399
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00124"
FT DISULFID 464..479
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00124"
FT DISULFID 582..597
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00124"
FT DISULFID 624..639
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00124"
FT DISULFID 662..677
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00124"
SQ SEQUENCE 733 AA; 81519 MW; 5350194D08BAC86D CRC64;
MDQRISTTTG NSSSRPKQQQ NPAYFVVSPV GNAALPPPLL SDCNRGSGCA AWWGRFQLIY
PDSQQPVPLS HYVHGPPAPI VLPMQHSKYT STQPKALPKT SHHQPSNKRP ADPLVNEKYK
TMLCKSYTIS GYCAYGAQCL FAHGDRELRP CPGRQRRPSK IRTFALLNME PIEFKLSEHT
NTVNVTPTVM ERMRYRADEF RLWLSTTCCA CLSSVPSYAL VFIAALLVMM IVSAIPLTLI
LTRMRSQPST ADSSQQDSKN ILSTQRIHHA WPDASVVPIH KYSDWEDAEE LIVQAKLFVP
PNISLCSEFG FACLEQPNYR CDGYSDCLDM SDEKGCKEHL CDGVKHCGNG EDEDPKTYCR
SKCDGKNEFS CRKADICLPI EAVCDGVQHC PFGDDELNCK ECRGEAKRCG DHCLSRRVLC
DGIMDCREDG GSDEKDCDCA SCSGKTSMLC DGEQKFCVDR RRMCDGRVDC PGGEDEFECH
GVCPSLMNIN SSGSHKKDVI MKTKKEGKDS NEALVKCSDG VLREWGVACG GLYPECRGSC
RHCNPQSAFQ CGLRNSTTEP KVRNDDNNTP NGRECIHRSL ICDGKQDCFD GSDELNCDCE
NALQCQDYGR GLPTGRCYSE DQKCDGYTDC VGGEDERNCA KCKNGAFLCQ SEKRCISSMA
RCNGLDDCED ASDELHCTCD ECTRHSSRPM YMCQETQRCF PLDKVCNPTS SCPNATKMDE
LFCAVQKRGI EHL
//
