ID A0A194YSG1_SORBI Unreviewed; 1493 AA.
AC A0A194YSG1;
DT 05-OCT-2016, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2016, sequence version 1.
DT 27-MAR-2024, entry version 30.
DE RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3004G311400 {ECO:0000313|EMBL:KXG31179.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG31179.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:KXG31179.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000763; KXG31179.1; -; Genomic_DNA.
DR STRING; 4558.A0A194YSG1; -.
DR EnsemblPlants; KXG31179; KXG31179; SORBI_3004G311400.
DR Gramene; KXG31179; KXG31179; SORBI_3004G311400.
DR eggNOG; KOG0954; Eukaryota.
DR InParanoid; A0A194YSG1; -.
DR OrthoDB; 1058151at2759; -.
DR Proteomes; UP000000768; Chromosome 4.
DR ExpressionAtlas; A0A194YSG1; baseline.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd15571; ePHD; 2.
DR CDD; cd15492; PHD_BRPF_JADE_like; 1.
DR CDD; cd15489; PHD_SF; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 4.
DR InterPro; IPR034732; EPHD.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR13793:SF107; PHD FINGER FAMILY PROTEIN; 1.
DR PANTHER; PTHR13793; PHD FINGER PROTEINS; 1.
DR Pfam; PF13831; PHD_2; 1.
DR Pfam; PF13832; zf-HC5HC2H_2; 2.
DR SMART; SM00249; PHD; 4.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 2.
DR PROSITE; PS51805; EPHD; 2.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 2.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Methyltransferase {ECO:0000256|ARBA:ARBA00022603};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Transferase {ECO:0000256|ARBA:ARBA00022603};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 296..347
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 363..487
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT DOMAIN 1094..1143
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 1165..1274
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT REGION 57..89
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 738..761
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 903..935
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1033..1078
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1403..1469
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 59..74
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 915..934
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1055..1078
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1425..1448
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1449..1463
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1493 AA; 164001 MW; FF69DC1755603522 CRC64;
MSGEMARAEA LPQGEAPVLG VDLYAQATKA VSLRTPFEGD EAAPRVPTLP ARLVSWAGPG
DARKKHKKIL PPRPDDAAPE PPPVSPVATP AKVGLWDQFE AYFRPVTLAD VEMLRPKLPF
GYSKVDPCML IPFLGSDKEL INQAETYDVA VAETTSYLGV GGEEVVTNRE RGVQSVHLAS
QKERNDQSAE QDIHDVVVQQ MVSDKELNRH RGEQGIHEVS VQLGGRSFGV DQPGSSSGIV
LAQCIEEEGV SLNWLIGATG RFVLTSERPN KKRKLLGADA GLEQLVLLPR TGAEASSSCD
VCCLGESSMD SNRIVNCSNC KVSVHQKCYG LHAVPDGQWL CARCTYLEST GWSLNEDAGG
TQSMPCALCP KEKGALKPVK VEPTRNEGVG HQKFVHLFCS LWAPEVFVED MESMEPVLSL
ENVQENRMKL TCSICKIKHG ACVRCSHGTC RTPFHPICAR ESKHQMEIWG KSRHPNVELR
AFCSKHSAVG YTSSVENSNL ASEQRKSVPD NTTLNSGKIP ILRFTRKNKD KFINCGTSTS
SSGNLIRVKT IEQGALANTV RNANTQPIRI WETGTGHTSV GGDHMRSSGD IAVVLRKLID
SGKVSVSDIA SEVGISSESL EAALVGETTT FSHGLTLKII KWLQNSVHMH GAQGNVCKGR
SGVVQDNKSD GLDTTDTVNV KNALVLDDDK GVPVDVPDSA VTEPAGTRSK SNSKILKENN
ATCATGVTIL QNGKKNMVKE GSNPECSAKQ SANESTQEFS PISNKDVLKD EHRILILNDT
SGNNDFGTST ETPNENQGAL LGRKFNDLTE VELGPCLEKG VSSHDHCFVQ ADNGRDGVDS
VENSFNARVC DSNCSHGQPF FNFDDSHSYI HPFIKKKISH HWDITFNQNK EALNHYVQES
SYPSHEKIPT DSSVEVEGTA DTTATGQVSK ARSSKILEHS PDDELEGEMV YLQSRLLDNA
VVLKHRYEKL IAKVVQNLSR ELNAFSKRKW DLIFVNQFLH DVREAKKRGR KEKRHKEAQA
VLAAAAAAIA SSSRNSTVRK DAKEDAPESS PKLVAGSSRV GQRTSSLPRI NDSSKSSDNK
FGSFHMPISS KENGLYCDVC MRTETLLNRI FVCSRCKAAV HIDCYRNLEN SIGPWNCELC
EDQDISLEAA TVSDKSHCNG KNLPFAQCGM CHGTSGAFRK TVDGKWVHAF CAEWLLDTKY
VRGQDNPVEG MESLVEGKDT CCVCLRNVGT CLRCSSGDCN ITFHPTCARS SGLYMNTKGF
GTTPQHKAYC GKHSVEQKEA DAQQYGPEEL TSMKRMRVEL EKLRLLCERI IKREKVKRET
VMCDHDILAK TKDTVIFSFL ACGASSESAT TSVNNRSYSG AAQRSDDVTV DSTISGKKTI
RFSLNNKDAD RNTADSSRTL ISFKRKLSER GPRAGKQLPQ RPTIAAEKLE DEDKKTTDKK
REMFQKERVM TSDQASTQNQ LLPPGYFYVP RDSLSKEKLW NRTQPHNPQE PGG
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