ID A1BBZ5_PARDP Unreviewed; 619 AA.
AC A1BBZ5;
DT 23-JAN-2007, integrated into UniProtKB/TrEMBL.
DT 23-JAN-2007, sequence version 1.
DT 27-MAR-2024, entry version 111.
DE SubName: Full=GAF modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ABL73039.1};
GN OrderedLocusNames=Pden_4979 {ECO:0000313|EMBL:ABL73039.1};
OS Paracoccus denitrificans (strain Pd 1222).
OG Plasmid pPD1222 {ECO:0000313|Proteomes:UP000000361}.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Paracoccaceae; Paracoccus.
OX NCBI_TaxID=318586 {ECO:0000313|EMBL:ABL73039.1, ECO:0000313|Proteomes:UP000000361};
RN [1] {ECO:0000313|Proteomes:UP000000361}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Pd 1222 {ECO:0000313|Proteomes:UP000000361};
RC PLASMID=pPD1222 {ECO:0000313|Proteomes:UP000000361};
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Spiro S.,
RA Richardson D.J., Moir J.W.B., Ferguson S.J., van Spanning R.J.M.,
RA Richardson P.;
RT "Complete sequence of plasmid 1 of Paracoccus denitrificans PD1222.";
RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP000491; ABL73039.1; -; Genomic_DNA.
DR AlphaFoldDB; A1BBZ5; -.
DR EnsemblBacteria; ABL73039; ABL73039; Pden_4979.
DR KEGG; pde:Pden_4979; -.
DR eggNOG; COG3284; Bacteria.
DR HOGENOM; CLU_000445_8_12_5; -.
DR OrthoDB; 9805953at2; -.
DR Proteomes; UP000000361; Plasmid pPD1222.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR PANTHER; PTHR32071:SF77; TRANSCRIPTIONAL REGULATORY PROTEIN GLRR; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Plasmid {ECO:0000313|EMBL:ABL73039.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000000361};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Two-component regulatory system {ECO:0000256|ARBA:ARBA00023012}.
FT DOMAIN 328..551
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 619 AA; 67462 MW; 818BC011BA374AA5 CRC64;
MRGMPDTGTH VLEVIRVAEG ETSPRRDADV LASWRRCVNE HQLDPSRHAG PRIVTQKELR
QHRQESEELL GVARHGMEDL YRRVNAMGYV LLLANARGVT VDAIGDAELD RELRHAGLIA
GSEWHERHVG TNGVGACLAT GRAITVHRTD HFDVALTPLS CTAVPVHDTR GGLIGVLDLS
HLQAPQDKMS QALTLEVMKS CVRRIEMANL VRRHRADWIL RLNPSPEFLD VDPMAAVAID
PEGRISGMTN NARELLAGGP AQALIGRRFD DIFAYDMDDL PKLSRAMAPV DGALEMQAGG
LIFARAVPPT APPRRAAEGS LPQPLRAIHG GDPAMECLAE RAAKVVDRQI SVILRGETGT
GKEFIARAMH ESSRRRGAFV AINCAALPEA LIESELFGYT PNAFTGAHAR GKKGLIREAH
GGTLFLDEIG DMPLALQARL LRVLSERELL PVGATRAEPV DIRVISASHH DLAQLVAEGR
FRQDLYYRLN GLVLDIPPVR ARADLEWLIA RIAGATEGKP RFSPQAMALL LAHDWPGNVR
EIVNLCELAA AMCDGAPVLP AHLPAGMADR AALSRSPAGS RPEDELLRLL DEHGGNVSAA
ARAAKIDRST FYRRLRKSK
//
