ID A1SC31_NOCSJ Unreviewed; 257 AA.
AC A1SC31;
DT 06-FEB-2007, integrated into UniProtKB/TrEMBL.
DT 06-FEB-2007, sequence version 1.
DT 27-MAR-2024, entry version 77.
DE SubName: Full=YfbU family protein {ECO:0000313|EMBL:ABL79366.1};
GN OrderedLocusNames=Noca_4782 {ECO:0000313|EMBL:ABL79366.1};
OS Nocardioides sp. (strain ATCC BAA-499 / JS614).
OG Plasmid pNOCA01 {ECO:0000313|EMBL:ABL79366.1,
OG ECO:0000313|Proteomes:UP000000640}.
OC Bacteria; Actinomycetota; Actinomycetes; Propionibacteriales;
OC Nocardioidaceae; Nocardioides.
OX NCBI_TaxID=196162 {ECO:0000313|EMBL:ABL79366.1, ECO:0000313|Proteomes:UP000000640};
RN [1] {ECO:0000313|Proteomes:UP000000640}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RC PLASMID=pNOCA01 {ECO:0000313|Proteomes:UP000000640};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Mattes T., Gossett J.,
RA Richardson P.;
RT "Complete sequence of plasmid pNOCA01 of Nocardioides sp. JS614.";
RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABL79366.1, ECO:0000313|Proteomes:UP000000640}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RC PLASMID=pNOCA01 {ECO:0000313|EMBL:ABL79366.1,
RC ECO:0000313|Proteomes:UP000000640};
RX PubMed=21551312; DOI=10.1128/JB.05109-11;
RA Coleman N.V., Wilson N.L., Barry K., Brettin T.S., Bruce D.C., Copeland A.,
RA Dalin E., Detter J.C., Del Rio T.G., Goodwin L.A., Hammon N.M., Han S.,
RA Hauser L.J., Israni S., Kim E., Kyrpides N., Land M.L., Lapidus A.,
RA Larimer F.W., Lucas S., Pitluck S., Richardson P., Schmutz J., Tapia R.,
RA Thompson S., Tice H.N., Spain J.C., Gossett J.G., Mattes T.E.;
RT "Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete
RT Nocardioides sp. strain JS614.";
RL J. Bacteriol. 193:3399-3400(2011).
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DR EMBL; CP000508; ABL79366.1; -; Genomic_DNA.
DR RefSeq; WP_011751491.1; NC_008697.1.
DR AlphaFoldDB; A1SC31; -.
DR KEGG; nca:Noca_4782; -.
DR eggNOG; COG3013; Bacteria.
DR HOGENOM; CLU_095299_0_0_11; -.
DR OrthoDB; 4942058at2; -.
DR Proteomes; UP000000640; Plasmid pNOCA01.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd21631; RHH_CopG_NikR-like; 1.
DR Gene3D; 1.10.3190.10; yfbu gene product, domain 2; 1.
DR InterPro; IPR002145; CopG.
DR InterPro; IPR010985; Ribbon_hlx_hlx.
DR InterPro; IPR005587; UPF0304_YfbU.
DR InterPro; IPR023146; YfbU_alpha-helical_sf.
DR Pfam; PF01402; RHH_1; 1.
DR Pfam; PF03887; YfbU; 1.
DR SUPFAM; SSF47598; Ribbon-helix-helix; 1.
DR SUPFAM; SSF116960; YfbU-like; 1.
PE 4: Predicted;
KW Plasmid {ECO:0000313|EMBL:ABL79366.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000000640}.
FT DOMAIN 4..35
FT /note="Ribbon-helix-helix protein CopG"
FT /evidence="ECO:0000259|Pfam:PF01402"
SQ SEQUENCE 257 AA; 29251 MW; 560C42AE90D232DC CRC64;
MATITLRIDD PTRDQLQSMA DGRGVSVSEL LRSAIDGLFD RDDRESPRRS VVPESLSAVD
RRQLALLHRI LARLVEDQTE DERLGHDGDT KYQLDRAEAL EEGWTIEYDT EFHGMEPELS
RRDCGLVMDI LDMFRVMKHS IEAATEPIPK DIATMLSFSG FDLNDDFESR LLGYARSLIA
DGKWQELSDV FSDKKDRGNS HEPLLGAYRR MLGAYEPIWR GIVRRDGRKG YLLAVHELQQ
VAAAAVHPEN RARRAGR
//
