ID PCH2_ORYSI Reviewed; 471 AA.
AC A2XUN8; Q01JZ0;
DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 2.
DT 03-APR-2013, entry version 33.
DE RecName: Full=Pachytene checkpoint protein 2 homolog;
GN ORFNames=OsI_16324, OSIGBa0116M22.9;
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC Ehrhartoideae; Oryzeae; Oryza.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Guang-Lu-Ai No.4;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J.,
RA Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y.,
RA Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D.,
RA Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J.,
RA Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H.,
RA Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y.,
RA Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W.,
RA Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W.,
RA Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y.,
RA Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
RA Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Plays a key role in chromosome recombination during
CC meiosis (By similarity).
CC -!- SIMILARITY: Belongs to the AAA ATPase family. PCH2 subfamily.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAH66942.1; Type=Erroneous gene model prediction;
CC Sequence=EAY94548.1; Type=Erroneous gene model prediction;
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DR EMBL; CR855156; CAH66942.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000129; EAY94548.1; ALT_SEQ; Genomic_DNA.
DR STRING; 39947.LOC_Os04g40290.1; -.
DR KEGG; dosa:Os04t0479000-01; -.
DR Gramene; A2XUN8; -.
DR eggNOG; COG0464; -.
DR HOGENOM; HOG000234557; -.
DR ArrayExpress; A2XUN8; -.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
DR GO; GO:0007126; P:meiosis; IEA:UniProtKB-KW.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003959; ATPase_AAA_core.
DR InterPro; IPR003960; ATPase_AAA_CS.
DR InterPro; IPR001270; Chaprnin_ClpA/B.
DR Pfam; PF00004; AAA; 1.
DR PRINTS; PR00300; CLPPROTEASEA.
DR SMART; SM00382; AAA; 1.
DR PROSITE; PS00674; AAA; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Meiosis; Nucleotide-binding.
FT CHAIN 1 471 Pachytene checkpoint protein 2 homolog.
FT /FTId=PRO_0000410927.
FT NP_BIND 213 220 ATP (Potential).
FT CONFLICT 15 15 S -> SA (in Ref. 1; CAH66942).
FT CONFLICT 28 32 SAAAV -> AATAA (in Ref. 1; CAH66942).
FT CONFLICT 105 105 N -> S (in Ref. 1; CAH66942).
FT CONFLICT 118 118 T -> I (in Ref. 1; CAH66942).
SQ SEQUENCE 471 AA; 51121 MW; BEEEE5C12C57FAB4 CRC64;
MEVSFSAPPP PDAASAAAAA PSLVPAVSAA AVAATTVSCS PQPPTGSPSA DDRILVSVEV
LLHATSTARA EDVCAAVERM LEARSLSYVD GPVPIPNDDP FLLANVKRIQ ICDTDEWTEN
HKVLLFWQVR PVVHVFQLSE DGPGEEPGED DTLSSFNEWA LPAKEFDGLW ESLLYEVGLK
QRLLRYAASA LLFTEKGVDP CLVSWNRIVL LHGPPGTGKT SLCKALAQKL SIRFKSRYSM
CQLIEVNAHS LFSKWFSESG KLVAKLFQKI QEMVEEESNL VFVLIDEVES LAAARQAAIS
GSEPSDSIRV VNALLTQMDK LKSWPNVIIL TTSNITTAID IAFVDRADIK AYVGPPTLQA
RYEILRSCLQ ELLRVGILTH TQGGNSLCLL SYFSLMENQH CPEVADPHGS VHLSGLLHKA
AEICEGLSGR TLRKLPFLAH ASVANPSCCD ASAFLHALIQ TAQRELSESR G
//
