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Database: UniProt
Entry: A3MXZ1_PYRCJ
LinkDB: A3MXZ1_PYRCJ
Original site: A3MXZ1_PYRCJ 
ID   A3MXZ1_PYRCJ            Unreviewed;       382 AA.
AC   A3MXZ1;
DT   03-APR-2007, integrated into UniProtKB/TrEMBL.
DT   03-APR-2007, sequence version 1.
DT   24-JAN-2024, entry version 82.
DE   RecName: Full=DNA-directed RNA polymerase subunit Rpo1C {ECO:0000256|HAMAP-Rule:MF_00411};
DE            EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00411};
DE   AltName: Full=DNA-directed RNA polymerase subunit A'' {ECO:0000256|HAMAP-Rule:MF_00411};
GN   Name=rpo1C {ECO:0000256|HAMAP-Rule:MF_00411};
GN   Synonyms=rpoA2 {ECO:0000256|HAMAP-Rule:MF_00411};
GN   OrderedLocusNames=Pcal_2093 {ECO:0000313|EMBL:ABO09508.1};
OS   Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1).
OC   Archaea; Thermoproteota; Thermoprotei; Thermoproteales; Thermoproteaceae;
OC   Pyrobaculum.
OX   NCBI_TaxID=410359 {ECO:0000313|EMBL:ABO09508.1, ECO:0000313|Proteomes:UP000001431};
RN   [1] {ECO:0000313|EMBL:ABO09508.1, ECO:0000313|Proteomes:UP000001431}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 21063 / JCM 11548 / VA1
RC   {ECO:0000313|Proteomes:UP000001431};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E.,
RA   Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J.,
RA   Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Cozen A.E.,
RA   Fitz-Gibbon S.T., House C.H., Saltikov C., Lowe T.M., Richardson P.;
RT   "Complete sequence of Pyrobaculum calidifontis JCM 11548.";
RL   Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: DNA-dependent RNA polymerase (RNAP) catalyzes the
CC       transcription of DNA into RNA using the four ribonucleoside
CC       triphosphates as substrates. Forms part of the jaw domain.
CC       {ECO:0000256|HAMAP-Rule:MF_00411}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC         ECO:0000256|HAMAP-Rule:MF_00411};
CC   -!- SUBUNIT: Part of the RNA polymerase complex. {ECO:0000256|HAMAP-
CC       Rule:MF_00411}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00411}.
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC       {ECO:0000256|HAMAP-Rule:MF_00411}.
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DR   EMBL; CP000561; ABO09508.1; -; Genomic_DNA.
DR   AlphaFoldDB; A3MXZ1; -.
DR   STRING; 410359.Pcal_2093; -.
DR   KEGG; pcl:Pcal_2093; -.
DR   eggNOG; arCOG04256; Archaea.
DR   HOGENOM; CLU_037097_1_0_2; -.
DR   OMA; TPMMTVY; -.
DR   OrthoDB; 372142at2157; -.
DR   Proteomes; UP000001431; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:UniProtKB-UniRule.
DR   CDD; cd06528; RNAP_A; 1.
DR   Gene3D; 1.10.150.390; -; 1.
DR   HAMAP; MF_00411; RNApol_arch_Rpo1C; 1.
DR   InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   InterPro; IPR012757; RPO1C.
DR   NCBIfam; TIGR02389; RNA_pol_rpoA2; 1.
DR   PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR   PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR   SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_00411};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|HAMAP-
KW   Rule:MF_00411};
KW   DNA-directed RNA polymerase {ECO:0000256|HAMAP-Rule:MF_00411,
KW   ECO:0000313|EMBL:ABO09508.1};
KW   Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00411,
KW   ECO:0000313|EMBL:ABO09508.1};
KW   Transcription {ECO:0000256|HAMAP-Rule:MF_00411};
KW   Transferase {ECO:0000256|HAMAP-Rule:MF_00411, ECO:0000313|EMBL:ABO09508.1}.
FT   DOMAIN          53..329
FT                   /note="RNA polymerase Rpb1"
FT                   /evidence="ECO:0000259|Pfam:PF04998"
SQ   SEQUENCE   382 AA;  42695 MW;  D42F8588610C451E CRC64;
     MGAVISKQEL LAKIRSILPQ PIYKELEAAV SELDEERATK LIYRVLRLYL ASLIDPGEAI
     GIVTAQSIGE PGTQMILRSF HYAGLREFSM ARGLPRLIEV VDARRHPSTP LMFVYLKPPY
     NKTREAAEKV AKQIQQVTLE MLTKEIDVDY VSGTISLVLD QEQLRYRGLS LKDVEKIVSK
     VRGKDLSISM KGNVIVASLA VPDILKIKKA RDKLLQVKIS GIKGIKKVVL QYDSKNDEWY
     IVTEGTNLEA VLQLEEVDKA RTYSNDLHEV EEVLGIEAAR TLIAHEIKRV LDEQGLDVDI
     RHMYLVADAM TWSGRVRPIG RHGVVGAKES PLARAAFEVT VKTLIEAAVR GEEERFKGVV
     ENIIAGKHVP IGTGIVKLLM RF
//
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