ID A4Y0I9_PSEMY Unreviewed; 492 AA.
AC A4Y0I9;
DT 29-MAY-2007, integrated into UniProtKB/TrEMBL.
DT 29-MAY-2007, sequence version 1.
DT 27-MAR-2024, entry version 106.
DE SubName: Full=Sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ABP87105.1};
GN OrderedLocusNames=Pmen_4358 {ECO:0000313|EMBL:ABP87105.1};
OS Pseudomonas mendocina (strain ymp).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=399739 {ECO:0000313|EMBL:ABP87105.1};
RN [1] {ECO:0000313|EMBL:ABP87105.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Ymp {ECO:0000313|EMBL:ABP87105.1};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E.,
RA Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C.,
RA Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N.,
RA Hersman L., Dubois J., Maurice P., Richardson P.;
RT "Complete sequence of Pseudomonas mendocina ymp.";
RL Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP000680; ABP87105.1; -; Genomic_DNA.
DR AlphaFoldDB; A4Y0I9; -.
DR STRING; 399739.Pmen_4358; -.
DR KEGG; pmy:Pmen_4358; -.
DR PATRIC; fig|399739.8.peg.4411; -.
DR eggNOG; COG3829; Bacteria.
DR HOGENOM; CLU_000445_8_1_6; -.
DR OrthoDB; 9804019at2; -.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013656; PAS_4.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR PANTHER; PTHR32071:SF99; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF08448; PAS_4; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 168..400
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT REGION 420..439
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 492 AA; 53489 MW; 06748C642658EF90 CRC64;
MAISRDDLDQ HGLIIGVSPE RFRAVAMPLL FDHLDAQCEG TIAVNRQARI VWINDKYAQK
VGISDPRSAL GKEVEEVLPA SRLREVVESG QPSMLDLMAF GDEHFVVTRI PLRDEDGTLV
GALGFVLFDR ARHLKPLMAK YANLQTQLLA TQHELAKARR ARYTIAGFIG ASAAASEVKR
QARRAAQLDA TVLIRGETGT GKELLAQGIH NLSPRANGPF VAVNVAAIPE TLVEAELFGT
APGAFTGAER KARIGKFEVA NGGTLFLDEI GDLPLPLPLQ AKLLRVLQEQ EVEPLGSNQV
KPLNVRVIAA THIDLEAKVA AGQFRGDLYY RLNVLALQVP PLRERREDIP ALVEFLLDDI
ANRSGQAPME LSHKALSLLA RQPWKGNVRE LRNLLERAQL DVDGPLLDVP QLQPLLAAPG
SAAATETPTS PAAPGADEPV QPLAQTLAQA ERRALQSMLV ACKGNRRRAA MELGISRASL
YSKLQQHGLS QR
//
