ID A4ZHK6_CAEV Unreviewed; 221 AA.
AC A4ZHK6;
DT 29-MAY-2007, integrated into UniProtKB/TrEMBL.
DT 29-MAY-2007, sequence version 1.
DT 24-JAN-2024, entry version 47.
DE SubName: Full=Pol polyprotein {ECO:0000313|EMBL:ABI29234.1};
DE Flags: Fragment;
GN Name=pol {ECO:0000313|EMBL:ABI29234.1};
OS Small ruminant lentivirus.
OC Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
OC Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus;
OC Caprine arthritis encephalitis virus.
OX NCBI_TaxID=254355 {ECO:0000313|EMBL:ABI29234.1};
RN [1] {ECO:0000313|EMBL:ABI29234.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=1GA {ECO:0000313|EMBL:ABI29234.1};
RX PubMed=17240470; DOI=10.1016/j.virusres.2006.12.014;
RA Gjerset B., Jonassen C.M., Rimstad E.;
RT "Natural transmission and comparative analysis of small ruminant
RT lentiviruses in the Norwegian sheep and goat populations.";
RL Virus Res. 125:153-161(2007).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Endonucleolytic cleavage to 5'-phosphomonoester.; EC=3.1.26.4;
CC Evidence={ECO:0000256|ARBA:ARBA00000077};
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DR EMBL; DQ844930; ABI29234.1; -; Genomic_RNA.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR000477; RT_dom.
DR PANTHER; PTHR33064; POL PROTEIN; 1.
DR PANTHER; PTHR33064:SF35; RIBONUCLEASE H; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00022918};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 88..221
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ABI29234.1"
FT NON_TER 221
FT /evidence="ECO:0000313|EMBL:ABI29234.1"
SQ SEQUENCE 221 AA; 25205 MW; E73C3AD6DACC6CA7 CRC64;
NKVPMTYKGR NIQGSLVVLR DSPVEVLGRD NMEAFGVTLI MANLEDKKIP TIPVELKEGC
KGPHVPQWPL TAEKLQGLTG IVEKLLQEGK LAEAPEGWTW NTPIFCIKKK SGKWRMLIDF
RELNKQTADL AEAQLGLPHP GGLQRKKNVT ILDIGDAYFT IPLYEPYQKY TCFTLLSPNN
LGPCKRYYWK VLPQGWKLSP AVYQFTMQRL LKGWIQQHKN I
//