ID A5ASD2_VITVI Unreviewed; 1801 AA.
AC A5ASD2;
DT 12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT 12-JUN-2007, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE RecName: Full=Integrase catalytic domain-containing protein {ECO:0000259|PROSITE:PS50994};
GN ORFNames=VITISV_037164 {ECO:0000313|EMBL:CAN82551.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CAN82551.1};
RN [1] {ECO:0000313|EMBL:CAN82551.1}
RP NUCLEOTIDE SEQUENCE.
RA Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D.,
RA Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D.,
RA Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.,
RA Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N.,
RA Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A.,
RA Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T.,
RA Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
RA Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J.,
RA Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P.,
RA Gutin A., Van de Peer Y., Salamini F., Viola R.;
RT "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis
RT vinifera L.): coping with a highly heterozygous genome.";
RL PLoS ONE 2:e1326-e1326(2007).
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DR EMBL; AM433729; CAN82551.1; -; Genomic_DNA.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 4: Predicted;
FT DOMAIN 1491..1667
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 1..47
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 352..379
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 616..651
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 18..45
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 353..379
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1801 AA; 205596 MW; 1AC8D3FC3D7AFF30 CRC64;
MSNGPSGPKI VPSGPKPSLN LKGSQGHNVE SDKSLNQSLQ SGSEKASPYL LHGHSEVALP
TVVQTTVIDD AYAHIDRIEQ RMRQLRVSNG STIWDDLEGM PVARLSTKFR MPDIDRCVKE
RARSFETKIG WLSVTTNPLL AHTTHAVPLP ADDIHFLDFA ELDDHIHMLS WDELEPEPIV
ADEMYEIGEV TLGPRMPTPF RLVPEAATLQ TTTIETVQTP YVDVSQTPDV QYILRGGRVL
RIPPPTTARP LEGISSLEEV RREDDEILSS GSQXSNTSNS AQIGVEMKKL XPLEADHTKL
KANFAGCEIS LWLRNHKLCM PNWIRDSGGR LVKCETPHNK ELELSLNIME ATPEDQHSHH
GHQDNPNAFR SMRDHMHPPP KENGKFYECW ERYMEAINAC PHHGFDTWLL TLNEDVDMKA
KFAAMTRRLE ELELKMXHEV QAVXETPVQV KPCPICQSYE HLVEECPTIP AAREMFGDQA
NAIGQFKPNN NAPYGNTYNS SWRNHPNFSW KPRAPQYQQP AQPSQQASSL EQAIVNLCKV
VGDFVGDQKA INAQLSQRID SVESTLNKRM DEMQNDLSQK IDNLQYSISR LTNLNIVQEK
DVKALITLRS GKKVELPTPK PHVEEEEETK KREEIKGKKK DISEGKEDHD SIVNTNPEKV
LIKEEMLKKH TSSHFPQALH GKKGIKNAAE ILEVLRQVKV NIPLLDMIKQ VPTYAKLLKD
LCTIKRGLNV NKKTFLTEQV SAIIQCKSHL KYKDPGCPTI SVMIGGKVME KALLVLEASV
NLLPYSVYKQ LGLSELKPTS ITLSLVDRSV KIPRGIIEDV LVQVDNFYYP VDFVVLDTDP
FVKEANYVPI ILGRPFLATS NAIINCRNGL MQLTFGNMTL ELNIFDMSKK LITLEEEEGP
EEVCIIDTLV EEHCNXNMQD KLNESLGDLE EGLPEPSDVL ATLQDWRRRE EILPLFNKEE
AQEAAKEETP KLNLKPLPME LKYTYLEENK QCLVVISLSL TSPQEKCLLE VLKEVPLVCT
HHIYMEEEAK PIRQPQRRLN PHLQEVVRAE VLKLLQADII YPISDSPWVS PTQVVPKKSG
ITVVQNEKGE EITTRLTSVL ERVSGHPFYC FLDGYSGYFQ IEIDVEDQEN TTFTCPFGTY
AYRKMPFGLC NAPATFQRCM LSIFSDMVER IMEVFMDDIT IYGSTFEECL VNLEAVLNIC
IEKDLVLNWE KCHFMVRQGI VLGHIISEKD IEVDKAKVEL IVKFPSPTTV KRVRQFLGHA
GFYRRFIKDF SKLSKPLCEL LAKDAKFIWD ERCQKSFDQL KQFLTTTPIV RALNWQLPFE
VMCDATDFAI GAVLGQREDE KPYFRTYLVG SFIIVFTDHS ALKYFLTKQD AKARLAIAHN
SHVLPINDDF PEKSLMFLAK TPWYAHIANY LVTGEVPNQI IRKCVPEEEQ QGILSHCHEN
ACGGHFASQK TIMKVLQSGF TWPSLFKDSH IMCRSYDRCQ RLGKLTRRNQ MPMNPILIVD
LFDVWGIDFM GPFPMSFGNS YILVGVDYVS KWVEAIPCKH NDHRVVLKFL KKNIFSRFGV
PKAIISDRGT HFCNKPFETL LAKYGVKHKV ATPYHPQTSG QVELANREIK NILMKVVITT
RRDWSIKLHD SLWAYRTTYK TILGMSSYRL VYGKACHLPV EVEYKAWWAI KKLNMDLIRA
GAKRCLDLNE MEELRNDAYI NSKVAKQRMK RWHDQLISNK EFRKGQGVLL YDSGPHIFPR
KLKSRWIGPF IIHQVHLNGV VELLNSNSTD TFKVNDHRLK PFIEPFKQEK EEINLLEPQK
A
//
