ID A5AY99_VITVI Unreviewed; 1072 AA.
AC A5AY99;
DT 12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT 12-JUN-2007, sequence version 1.
DT 08-NOV-2023, entry version 61.
DE RecName: Full=Hemimethylated DNA-binding domain-containing protein {ECO:0000259|SMART:SM00992};
GN ORFNames=VITISV_009461 {ECO:0000313|EMBL:CAN65041.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CAN65041.1};
RN [1] {ECO:0000313|EMBL:CAN65041.1}
RP NUCLEOTIDE SEQUENCE.
RA Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D.,
RA Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D.,
RA Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.,
RA Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N.,
RA Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A.,
RA Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T.,
RA Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
RA Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J.,
RA Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P.,
RA Gutin A., Van de Peer Y., Salamini F., Viola R.;
RT "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis
RT vinifera L.): coping with a highly heterozygous genome.";
RL PLoS ONE 2:e1326-e1326(2007).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; AM439973; CAN65041.1; -; Genomic_DNA.
DR AlphaFoldDB; A5AY99; -.
DR EnsemblPlants; Vitvi01g00077_t001; Vitvi01g00077_P001; Vitvi01g00077.
DR Gramene; Vitvi01g00077_t001; Vitvi01g00077_P001; Vitvi01g00077.
DR ExpressionAtlas; A5AY99; baseline and differential.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 2.30.30.390; Hemimethylated DNA-binding domain; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR011722; Hemimethylated_DNA-bd_dom.
DR InterPro; IPR036623; Hemimethylated_DNA-bd_sf.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR046960; PPR_At4g14850-like_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR001943; UVR_dom.
DR NCBIfam; TIGR00756; PPR; 3.
DR NCBIfam; TIGR02097; yccV; 1.
DR PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF02151; UVR; 1.
DR Pfam; PF08755; YccV-like; 1.
DR SMART; SM00992; YccV-like; 1.
DR SUPFAM; SSF141255; YccV-like; 1.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT DOMAIN 209..313
FT /note="Hemimethylated DNA-binding"
FT /evidence="ECO:0000259|SMART:SM00992"
FT REPEAT 410..444
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 565..599
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 665..699
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 766..800
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 801..835
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT COILED 116..143
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 172..199
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 1072 AA; 120287 MW; BF8EDC1199996F4F CRC64;
MVQCVSVSTL TTSGNGGVYG STALWGRHFQ LMRKTQIRTG SERNFLWHHC AQRLFFAGQL
VMQRQRNLRV EAGWLFKGGG DQGLDASSEC SESANEDILI FFFQLDLATR VQYALNTEQY
EIAQQLRDKL TEVEAEVVKQ REAKRGSTSK SEAQDKALSM IRLRADLQKA IEAENYALAA
ELRDEINKLE AESLAASANA LVYENTPYAF RLGQKVRHKV FGYSAVICGM DPVCCESSSW
RESAHVDKLT RGSNQPFYQV LVDVHVDPNL LVAYVPEENL LVPDGPRPNK GRFDHPYLSF
LFYGMDAAGD FIPIKQLREK YNRPRHEVPG DPPGEASAEY ACFFTLNSSR SLTSHKRCAT
STTLTQLHAH LFITGLHRHP PASTKLIESY AQIGIFESSK RVFDTFPKPD SFMWGVLIKC
YVWGGFFEEA VSLYHEMVYQ DQTQISNFVF PSVLKACSGF GDLSVGGKNG QASEGLDMFS
QMISEAVEPD SVTMLSVTEA CSELGSLRLG RLGRVKEGRS VHGFVIRRAM DPELDFLGPA
LMELYADTGN LRDCHKVFET IKEKTILSWN TLISIFTRNG QPEEALLLFV QMQTQGLMPD
SYSLASSLSA CGTISFSQLG AQIHGYIIKT GNFNDFVQNA LIDMYAKCGF VHSANKMFEK
IKEKSLVTWN SMICGFSQNG YSVEAITLFD QMYMNCVKMD KLTFLSVIQA CSHLGYLEKG
KWVHHKLIMY GLRKDSYLDT ALTDMYSKCG ELQMAHGVFD RMSERSIVSW SVMIAGYGMH
GQINATISLF NQMLGSGIKP NDITFMHILS ACSHAGAVEE GKLYFNSMSE FGVEPKHDHF
ACMVDLLSRA GDLNGAYQII TSLPFPANSS IWGALLNGCR IHKRIDIIKS IEKNLLDVDT
ADTGYYTLLS NIYAEEGTWD KFGKVRSMMK SKGLRKVPGY STIEIDKKIY RFGPGDTSHS
QTKDIYRFLE NFRSLVHAQV YDSEPDNSIV GTSKFNKENN VVSHSEKLAI AFGIINTRPG
TTLRISKNLR VCRDCHSFAK IASKITGREI IMRDLNRFHC FRNGSCSCND YW
//