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Database: UniProt
Entry: A5AY99_VITVI
LinkDB: A5AY99_VITVI
Original site: A5AY99_VITVI 
ID   A5AY99_VITVI            Unreviewed;      1072 AA.
AC   A5AY99;
DT   12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT   12-JUN-2007, sequence version 1.
DT   08-NOV-2023, entry version 61.
DE   RecName: Full=Hemimethylated DNA-binding domain-containing protein {ECO:0000259|SMART:SM00992};
GN   ORFNames=VITISV_009461 {ECO:0000313|EMBL:CAN65041.1};
OS   Vitis vinifera (Grape).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; Vitales; Vitaceae; Viteae; Vitis.
OX   NCBI_TaxID=29760 {ECO:0000313|EMBL:CAN65041.1};
RN   [1] {ECO:0000313|EMBL:CAN65041.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D.,
RA   Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D.,
RA   Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.,
RA   Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N.,
RA   Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A.,
RA   Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T.,
RA   Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
RA   Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J.,
RA   Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P.,
RA   Gutin A., Van de Peer Y., Salamini F., Viola R.;
RT   "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis
RT   vinifera L.): coping with a highly heterozygous genome.";
RL   PLoS ONE 2:e1326-e1326(2007).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   EMBL; AM439973; CAN65041.1; -; Genomic_DNA.
DR   AlphaFoldDB; A5AY99; -.
DR   EnsemblPlants; Vitvi01g00077_t001; Vitvi01g00077_P001; Vitvi01g00077.
DR   Gramene; Vitvi01g00077_t001; Vitvi01g00077_P001; Vitvi01g00077.
DR   ExpressionAtlas; A5AY99; baseline and differential.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 2.30.30.390; Hemimethylated DNA-binding domain; 1.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR011722; Hemimethylated_DNA-bd_dom.
DR   InterPro; IPR036623; Hemimethylated_DNA-bd_sf.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   InterPro; IPR001943; UVR_dom.
DR   NCBIfam; TIGR00756; PPR; 3.
DR   NCBIfam; TIGR02097; yccV; 1.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF13041; PPR_2; 3.
DR   Pfam; PF02151; UVR; 1.
DR   Pfam; PF08755; YccV-like; 1.
DR   SMART; SM00992; YccV-like; 1.
DR   SUPFAM; SSF141255; YccV-like; 1.
DR   PROSITE; PS51375; PPR; 5.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   DOMAIN          209..313
FT                   /note="Hemimethylated DNA-binding"
FT                   /evidence="ECO:0000259|SMART:SM00992"
FT   REPEAT          410..444
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          565..599
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          665..699
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          766..800
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          801..835
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   COILED          116..143
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COILED          172..199
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   1072 AA;  120287 MW;  BF8EDC1199996F4F CRC64;
     MVQCVSVSTL TTSGNGGVYG STALWGRHFQ LMRKTQIRTG SERNFLWHHC AQRLFFAGQL
     VMQRQRNLRV EAGWLFKGGG DQGLDASSEC SESANEDILI FFFQLDLATR VQYALNTEQY
     EIAQQLRDKL TEVEAEVVKQ REAKRGSTSK SEAQDKALSM IRLRADLQKA IEAENYALAA
     ELRDEINKLE AESLAASANA LVYENTPYAF RLGQKVRHKV FGYSAVICGM DPVCCESSSW
     RESAHVDKLT RGSNQPFYQV LVDVHVDPNL LVAYVPEENL LVPDGPRPNK GRFDHPYLSF
     LFYGMDAAGD FIPIKQLREK YNRPRHEVPG DPPGEASAEY ACFFTLNSSR SLTSHKRCAT
     STTLTQLHAH LFITGLHRHP PASTKLIESY AQIGIFESSK RVFDTFPKPD SFMWGVLIKC
     YVWGGFFEEA VSLYHEMVYQ DQTQISNFVF PSVLKACSGF GDLSVGGKNG QASEGLDMFS
     QMISEAVEPD SVTMLSVTEA CSELGSLRLG RLGRVKEGRS VHGFVIRRAM DPELDFLGPA
     LMELYADTGN LRDCHKVFET IKEKTILSWN TLISIFTRNG QPEEALLLFV QMQTQGLMPD
     SYSLASSLSA CGTISFSQLG AQIHGYIIKT GNFNDFVQNA LIDMYAKCGF VHSANKMFEK
     IKEKSLVTWN SMICGFSQNG YSVEAITLFD QMYMNCVKMD KLTFLSVIQA CSHLGYLEKG
     KWVHHKLIMY GLRKDSYLDT ALTDMYSKCG ELQMAHGVFD RMSERSIVSW SVMIAGYGMH
     GQINATISLF NQMLGSGIKP NDITFMHILS ACSHAGAVEE GKLYFNSMSE FGVEPKHDHF
     ACMVDLLSRA GDLNGAYQII TSLPFPANSS IWGALLNGCR IHKRIDIIKS IEKNLLDVDT
     ADTGYYTLLS NIYAEEGTWD KFGKVRSMMK SKGLRKVPGY STIEIDKKIY RFGPGDTSHS
     QTKDIYRFLE NFRSLVHAQV YDSEPDNSIV GTSKFNKENN VVSHSEKLAI AFGIINTRPG
     TTLRISKNLR VCRDCHSFAK IASKITGREI IMRDLNRFHC FRNGSCSCND YW
//
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