ID A5BJC5_VITVI Unreviewed; 1721 AA.
AC A5BJC5;
DT 12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT 12-JUN-2007, sequence version 1.
DT 27-MAR-2024, entry version 68.
DE RecName: Full=Integrase catalytic domain-containing protein {ECO:0000259|PROSITE:PS50994};
GN ORFNames=VITISV_038204 {ECO:0000313|EMBL:CAN72408.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CAN72408.1};
RN [1] {ECO:0000313|EMBL:CAN72408.1}
RP NUCLEOTIDE SEQUENCE.
RA Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D.,
RA Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D.,
RA Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.,
RA Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N.,
RA Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A.,
RA Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T.,
RA Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
RA Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J.,
RA Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P.,
RA Gutin A., Van de Peer Y., Salamini F., Viola R.;
RT "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis
RT vinifera L.): coping with a highly heterozygous genome.";
RL PLoS ONE 2:e1326-e1326(2007).
CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000256|ARBA:ARBA00004613}.
CC -!- SIMILARITY: Belongs to the plant rapid alkalinization factor (RALF)
CC family. {ECO:0000256|ARBA:ARBA00009178}.
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DR EMBL; AM461419; CAN72408.1; -; Genomic_DNA.
DR EnsemblPlants; Vitvi01g00029_t001; Vitvi01g00029_P001; Vitvi01g00029.
DR Gramene; Vitvi01g00029_t001; Vitvi01g00029_P001; Vitvi01g00029.
DR ExpressionAtlas; A5BJC5; baseline and differential.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:InterPro.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR HAMAP; MF_01077; RimP; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR025724; GAG-pre-integrase_dom.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR008801; RALF.
DR InterPro; IPR003728; Ribosome_maturation_RimP.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR013103; RVT_2.
DR PANTHER; PTHR34544:SF3; OS07G0155200 PROTEIN; 1.
DR PANTHER; PTHR34544; OSJNBA0006B20.18 PROTEIN; 1.
DR Pfam; PF13976; gag_pre-integrs; 1.
DR Pfam; PF05498; RALF; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF07727; RVT_2; 2.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 3: Inferred from homology;
FT DOMAIN 340..464
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 132..151
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1079..1109
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1150..1241
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1393..1418
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1151..1165
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1201..1241
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1396..1415
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1721 AA; 194266 MW; 254944A79BC10F4A CRC64;
MAKDVWDAVR ETYSDAENAS QIFEIKMRLW QMKQGDREVV EYYTEMLGLW QDLDLSCEEE
WECTGDSVRF KKKMENERVF EFLAGLNHEL DDVRSRVLNR RPLPSIREVF SEVRREEIRR
RVMLDLSLGP EGSTLLTHGP HGPHATVGHW KPRLPKAHSH QASTETQGHQ ASTEICQSTS
SLGFNSDQLA KLYEFFSNFQ ASGQSSTTLS SGSLAKKDGI LLPIAGKGSI RISESITLNP
VLHDLSSGKT IGSAKEREGL YYFNEIDVLG RCSPTVCNST SYPKDSELLL SHKKMGHPSF
QYLKHLFPSL CSNKTLLDFQ CEVCELAKHH RASFPKSKYK PSIPFTLIHS DLWGPSRTPN
RTHKKWFITF IDDHTRLCWV YLLTDKTEVR SVFLNFHSMI QTQFQTKIQI LRTDNGTEYF
NHSLSTYLEE NGIIHQSSCV NTPQQNGVAE RKNRHILEVA RALLFTSHMP SQFWGDSKSF
FLIRDLVHIF HFVSLGPLCL STPLGPKRNK FDPRALKCVF LGYSSTQKGY KCYDPVSKKL
YVSLDVTFFE HTPYYSLQGE SMSETRPYLT SDYLDVAMFE SILCLISTPS PNTKGHLNSG
GDTELQKNRE TLVYSRRPKS KFNETLISEA PKESELVIVP TPQEYGSNFD QVTDDLPIAL
RKQSRSCTLH PISKFVSYNF LFAKCHAFTT NLDKIQIPKN IQEAFKIPEW KEVVMEEIRA
LEKNENWEVM NLPRGKKLVG CKWIFTVKYK TDGTIERYKA CLVAKGFTRT YDIDYTETFA
PVAKLNTIRV LLSLAANLDW PLRQFDIKNA FLNGELEEEV FMMLPPGFCK EEEETRVCKL
KKSLYGLKQL PRAWFDRFAK DHHLIVYVDD IILXGDDTGE VERLKKVLAT EFEVKDLGQM
RYFLGMEVAR SRKGISIFQR KYVLDLLTET DMLGCKPSDT PIEARNRMES DGKPVDKEKY
QRLVGKLIYL SHTRPDIAFA VSVVSQYMHS LKESHLEAVY KILRYLKGSP GRGLFFKKSD
SKKVEIYTDA DWAGSIDDRR FTTEKCKCGA SAMLPKIEKA RQIRASMALQ AQSLARITSI
SGDAPPEGPK LNEDYGDTVP SRPFNNGLQV TNEVPTASTL VKQKISDGVE LEGEGEFGTV
IVHGGFEMDK TANQTPVSST KEPSAAHENV ESHPVGGPGI KSTNNWVEDT VDVAANNDQV
GESHPGEQTT SKSVFGSPEQ NLRTSSISQV QAGGGGVSSS QLKNETVSRT AFASQDKLWS
IYAAGNTVPI PFLRATDISP IALLSGNVLG GRQRESSGAV AVEAVQELFT GDSQLKKGRR
GQNEIPLPPS MYQRLTSSST LLNLAQALAY HKTSYEEMPL QDLQAVQEQQ TIQNLCDTLR
TILRLMLTFT DETSEGETTD GWEEEEEEEV EPEIGDGGDG GGIVLQNVPW GERVLSIARE
VLLQFGGDME LFSFKTTPRG YIYVRLDKLS NKYGCPSMEE IERYNLEYKK KLDEMGALGE
IPHNLAIEVS SPGAERLLKV PDDLDRFKDM PMRVSYVEDV ETQCLEKDGV FMLESIKTES
ANCVWKLANV RENRDPLGKG RPLSRKQKDW RLNLPFEMFR RYSLSLSLLL GMRMRLREGF
CVLMILIASI HVVASQMTHH KKCLEATIAE CFPGEELFME SEVSYRFLAE ARVKSISYGA
LTPDKGICKG STPAYSSCLP GPNKGSDRGC KSTYRCRSGS R
//
