ID A5C5B5_VITVI Unreviewed; 762 AA.
AC A5C5B5;
DT 12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT 12-JUN-2007, sequence version 1.
DT 27-MAR-2024, entry version 47.
DE RecName: Full=Reverse transcriptase Ty1/copia-type domain-containing protein {ECO:0000259|Pfam:PF07727};
GN ORFNames=VITISV_005376 {ECO:0000313|EMBL:CAN81844.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CAN81844.1};
RN [1] {ECO:0000313|EMBL:CAN81844.1}
RP NUCLEOTIDE SEQUENCE.
RA Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D.,
RA Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D.,
RA Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.,
RA Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N.,
RA Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A.,
RA Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T.,
RA Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
RA Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J.,
RA Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P.,
RA Gutin A., Van de Peer Y., Salamini F., Viola R.;
RT "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis
RT vinifera L.): coping with a highly heterozygous genome.";
RL PLoS ONE 2:e1326-e1326(2007).
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DR EMBL; AM482873; CAN81844.1; -; Genomic_DNA.
DR AlphaFoldDB; A5C5B5; -.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR013103; RVT_2.
DR PANTHER; PTHR42648:SF24; RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN; 1.
DR PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR Pfam; PF07727; RVT_2; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 13..34
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 535..647
FT /note="Reverse transcriptase Ty1/copia-type"
FT /evidence="ECO:0000259|Pfam:PF07727"
FT REGION 147..171
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 762 AA; 86101 MW; 86CD26F7889710CC CRC64;
MALYTHWYRH DQLLLNAIFA SVSKAVMPLI GMTTTSRARI MQLKEDLTLI QQGSHTVFEF
HHAIKVIADE LSLIDAPISN DDLTLYVLNG LGSEFRDMVA PICTREIALS FVELHDLLIG
HEHYLKAWME ILRPWVVTVN CSQWKSSSHR FKNNKNGSKQ NSSNKASSKK SFCMPNYDHP
GHTTKNYAKL QSRPTANCTT SSAPSNGKWL LDSATSHNIT SDLANLSIHY EYDGQDEVVL
GDGTGVNVVF ILWNYVLPYL KLMSSPWLEL VLRLIVGIIC WVTLFQNFYH LFFVVITYLC
PPLSPYCHKN STVERHHRHI VKTGMTLLHH ASALSTYWSY ALDTIVYLIN RLPNLLYLCQ
SPFEVLFGRV PDYHKLRTFG CQCYPWLVPY HANKFQPKSQ PCVFLGYSLT QHAFQCLDLH
MGKLYLSRHV TFDENIFPFT KATTSTPTAV ATPCPTSFSP SPVPPVCMVP SDDISVTPIA
LDATTTLTLS PTPGMASSSS TSNPSFFEPP LPITPAPPTC THPMIKRHLD GTMDWFKACL
VAKGFNQCSS VDYIETFSPV IKLTTIRLIF SLALSNNWPF KQIDVNNMFL HGQLTEQVFM
QQPVGFIDQS YPHHVCSLQK SIYGLKQGPR AWYNALRSGL LELEYRALAT ATSDIAWIKS
LLDELGLTLC EPPLLLYDNV GATQLSLNPV MHSRMKHIAI DLHFVYDFVH RGKLCVAHVH
KDDQLVDLLT KPLVQSRFNL LRGKINVANR MPILRDHISE ST
//
