ID A5INJ5_THEP1 Unreviewed; 584 AA.
AC A5INJ5;
DT 26-JUN-2007, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2007, sequence version 1.
DT 24-JAN-2024, entry version 78.
DE RecName: Full=HTH HARE-type domain-containing protein {ECO:0000259|PROSITE:PS51913};
GN OrderedLocusNames=Tpet_1768 {ECO:0000313|EMBL:ABQ47768.1};
OS Thermotoga petrophila (strain ATCC BAA-488 / DSM 13995 / JCM 10881 /
OS RKU-1).
OC Bacteria; Thermotogota; Thermotogae; Thermotogales; Thermotogaceae;
OC Thermotoga.
OX NCBI_TaxID=390874 {ECO:0000313|EMBL:ABQ47768.1, ECO:0000313|Proteomes:UP000006558};
RN [1] {ECO:0000313|Proteomes:UP000006558}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1
RC {ECO:0000313|Proteomes:UP000006558};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E.,
RA Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Detter J.C., Han C.,
RA Tapia R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.,
RA Mikhailova N., Nelson K., Gogarten J.P., Noll K., Richardson P.;
RT "Complete sequence of Thermotoga petrophila RKU-1.";
RL Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABQ47768.1, ECO:0000313|Proteomes:UP000006558}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1
RC {ECO:0000313|Proteomes:UP000006558};
RX PubMed=19307556; DOI=10.1073/pnas.0901260106;
RA Zhaxybayeva O., Swithers K.S., Lapierre P., Fournier G.P., Bickhart D.M.,
RA DeBoy R.T., Nelson K.E., Nesbo C.L., Doolittle W.F., Gogarten J.P.,
RA Noll K.M.;
RT "On the chimeric nature, thermophilic origin, and phylogenetic placement of
RT the Thermotogales.";
RL Proc. Natl. Acad. Sci. U.S.A. 106:5865-5870(2009).
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DR EMBL; CP000702; ABQ47768.1; -; Genomic_DNA.
DR RefSeq; WP_011944172.1; NC_009486.1.
DR AlphaFoldDB; A5INJ5; -.
DR KEGG; tpt:Tpet_1768; -.
DR eggNOG; COG1637; Bacteria.
DR eggNOG; COG1673; Bacteria.
DR eggNOG; COG1715; Bacteria.
DR HOGENOM; CLU_466857_0_0_0; -.
DR Proteomes; UP000006558; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0004519; F:endonuclease activity; IEA:InterPro.
DR GO; GO:0009307; P:DNA restriction-modification system; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR Gene3D; 1.10.10.1250; RNA polymerase, subunit delta, N-terminal domain; 1.
DR InterPro; IPR007759; Asxl_HARE-HTH.
DR InterPro; IPR007560; Restrct_endonuc_IV_Mrr.
DR InterPro; IPR038087; RNAP_delta_N_dom_sf.
DR Pfam; PF05066; HARE-HTH; 1.
DR Pfam; PF04471; Mrr_cat; 1.
DR PROSITE; PS51913; HTH_HARE; 1.
PE 4: Predicted;
KW Transcription {ECO:0000256|ARBA:ARBA00023163}.
FT DOMAIN 1..74
FT /note="HTH HARE-type"
FT /evidence="ECO:0000259|PROSITE:PS51913"
SQ SEQUENCE 584 AA; 67206 MW; FDEB3B5EDB96687F CRC64;
MTFKEAAYFI LKREKRPMTA REIVEIALKE KLIKTSSKSP DRDLAIQIYD DIRLNGENSP
FVKVGRGLFG LREFYEQKRE ETVGEVQHLI RRLEETQYRS NSPSEFEEVL KEAFSFLGFE
TELKGEPGNT DVVLKAKIGR DESYTVNVDG KTSRSGKISD VQIDWLSLED HREKTKANFI
VVVGPDFSKG NVEKRAQKSG VVLLKVKDLI ELLKEHARYP FNLLELKRLF ETPGNADYVV
EEIIRSHRDR TNFLENLKLI VEEMENLQSL LGYFSVDSLV ARTELGPQMI KSVIDLLNSP
LIKAVEEVSE GKYVLVIPKR ELSKLFGRLA SACEQEKEQK EQDDVKNKLV KNELTKDELI
KYLSRTERVP TVLREILLPL CLKHGVVSRE MIKEELVVRK MAQNLGQAGL VLSTVSKAIG
ENELLESIIS YDKLKPWKKD NFRLKEEYKE MVHAVIEELK GKEQPKTDLK NRLVEYLSRT
ERVPTVLREI LFPLCLKYDV VSREMVKKEL VLRKMAKDLG QAGLVLSTVS AVIGRDELLG
AIIMYDKPKP WKKDNFRLKE EYKGLVQEVI EELKEIKGNL QHGT
//
